SimpleSearch - Line and FST details
Line specific information
| Line ID | 310C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N429699) |
| Segregation Analysis | 50:36:24 |
| Confirmed for Hit | At1g05990 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 62, 3814, 8267, 8295, 83354, 83364, 87446, 87450, 87452, 87454, 87455, 87456 |
Gene hit At1g05990
| Sequence (A. th genome BLAST matches underlined) | >83-K015787-022-310-C11-8409 TATCCTGAGATTTCCCGGACTGAAGCCATTTACAATTGAATATATCCTACCATCACCATC AACATCCACTTTCTTTATCATCTTCTTACAATCGTCCAAGGTCTTACCTTGTTTGAGCCC CAAGGAAGACAAAACCGCCTTCAATTCATCCACCGTTATAAACCCATCTCCATTCTGATC AAACACATTGAAAGCTTCTTTCATGTCCTCTTCTTCTTCGTCTTCCTCGTCCATTATCGT CTTGTATAGCTCACCAAACTCGTCTATGTCCACGCACCCATCACCATTCACGTCGATCTT CTCGATCATTTGAGTCAACTCCTTGTCCGGGATGTAAATCCCTATGGGATCCTCCTTATA TGGTGAGAANNNNNNANNNNNNNNNTCNNNTTTTTTTCTCNNTTNAAAAATCCCCATTTC ATACNCCNTATANTAAAANNNNNNTNNCCNNNNNCNNTCCNCNNCCNNNNTTTNNNNTTT CACCCCCCNTTAACCCTAATTACCCCCCCCCACCTTAAAAATCACCAAAAACTACCACCC TTAATCTCTCACCCCCTAACAANACCTTACCCCAAACTACACCCATNCCCAATATACAAT CCCCCTAAAAACCCTACATTCCNCTTAATAATACCCACACCCCACCCAACTATCTCNCCT ATCCAATTTCACACCTNCCTCTNTTTCTCACATNTAAAATANNTAACACTACAACAACCA AAAAAACCATTTTTATCCAAAATATTACCACACCCTCTATAAATTNTTCCCCNTAAANTC TNCCCCATAAANCACAATATTCCANAAAATAAAATTATACCCTTTAACCCCTCTTTTTCC CCCCCCCCTCAACCCAAAAACATTATTATATCTTT |
| GenBank Accession | AL948166 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:1818983 - go to primer design |
| BLAST e Value | 3e-168 |
| Hit Clone Code (BAC ID) | T21E18 |
| Hit Gene Code | At1g05990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | EF hand calcium-binding protein family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g06020
| Sequence (A. th genome BLAST matches underlined) | >83-K015791-022-310-C11-8409 TGTCACTGAGATTTCCCGGACATGAAGCAATTTTATATATTTCCTATCGGAATAATATGC CATGTGGAATTTTAACCCTAATTTTACTCTTATAATTTGAAACGCAAATCAAAGAAAGGT GATAATTAAATCAATACAAGGCGTTAATTAATAAAATTTTGTAAATTGCAAACCAATCTT TCCTTTTACGGCTAACAAATGAATATTAAAAAAAAGATGTTGAAGGTTATGAAGCTATGA CTTTATTTGAATAAAAATACGATTTGATATAAATTTTATTTGTTTGTGCAGGCGAAAGTG TTCCACTATGGATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCA ATGGAAGTGGCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCT CTTTGGCCATCACCTGAAGAAGCTATGGGACCCCCTAATAAAGGGGAGAANNNTNNNCCC CCTTTTTTTCCCCTTTCNCACATCACCTCTCCCCCCCTTTTTNTATAAACCCNATTTNNN NNNNTNCNNCCNNNNNNNNTNNAAAACCCATCATTTAACCCCCCCCATCNCCNACCAAAC CCAACCCTCCAACCACAATAAAACAATATCAACAAATTAT |
| GenBank Accession | AL948167 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:1825049 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T21E18 |
| Hit Gene Code | At1g06020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pfkB-like carbohydrate kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
