SimpleSearch - Line and FST details


Line specific information

 
Line ID 324B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N431024)
Segregation Analysis 50:50:49
Confirmed for Hit At5g08660 At3g16480
Parent of DUPLO pair none
Parent of pair(s) 12035

Gene hit At5g08660

 
Sequence (A. th genome BLAST matches underlined) 
>26-K015983-022-324-B04-8409
TGTCCTGTAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCCGACATGCGCATACA
CTTGAGATATGGCCTATCTACGATATTGAGTTTAATTCAGAATACGCAGCATTGGCTGGT
CCCTGATACGACAAAGAAGGCATCTGACACTTCTTTCGACCTTTAGACTTTACAATCTCT
GATCACGGTATATAGCTATATCTTTAGCGGCTAATGAGTGTAGAATGGGTCCACGGAGCG
CATCATGGTATTGGCTGGGGTGGATAGAGTCCAAATACTAGGGGAGCGATGAATGAGATG
TAGACCTGCAACTTCTACATTTTGTCTTTTTATTTCTCCAATGCTATCGTTTCTAATCTT
ACAGGACTGATTTCACTATGCGGATCCTCGCCTATAGTGAGANACTTTGCTNNGGTCTCT
TCCAATTTC
GenBank Accession AL949875 [GenBank]
Graphic View Graphic view of gene At5g08660
Predicted Position of Insertion Chr5:2817003 - go to primer design
BLAST e Value 5e-62
Hit Clone Code (BAC ID) T2K12
Hit Gene Code At5g08660 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation D-lactate dehydrogenase (DUF668)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g16480

 
Sequence (A. th genome BLAST matches underlined) 
>26-K015976-022-324-B04-8409
TATCCTGAGATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGCCGCCGCTGCCG
CTTTGCACCCGGTGGAGCTTGCATGTTGGTTTCTACGCAGAACTGAGCCGGTTAGGCAGA
TAAAATGCAATTGGAAAATGCTATGGGATCTCNCCTATAGTGAGAGATTCAATTTTATCG
CTTTATAGTANCTGGTGCCATTATTCATGCTTTTTGCAGGTTTATGAAATGTCTCTGTTT
CAAAAGTTCTTATTTTTACAATGTTAATTGAATCAAGAGATTAATGATGCTTAGGATGTG
TGTGTGTGTGTGTGTGTATATAGGGCATTCTAAACCATAATTTTCGAGCTTCTCTATATG
CAAGCTCTATGGTATCCTCCCTATAGTGAGACNAAAGNGAGAGANTNTTTCCCTTTTTTT
T
GenBank Accession AL949874 [GenBank]
Graphic View Graphic view of gene At3g16480
Predicted Position of Insertion Chr3:5600076 - go to primer design
BLAST e Value 8e-64
Hit Clone Code (BAC ID) T2O4
Hit Gene Code At3g16480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation mitochondrial processing peptidase alpha subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37