SimpleSearch - Line and FST details
Line specific information
| Line ID | 332F09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N431845) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At2g28780 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At5g15630
| Sequence (A. th genome BLAST matches underlined) | >70-K016064-022-332-F09-8409 GACTACAAACCAGTCTCTCCTTACGGGACCAGAAGCACCTCAATACCTGCCTCAACCACT ACTATTGAACTTCGAACCAACCATTGGATGACTAAGATAGATTCTGAACATCCTGTCTGA TCACCAGCGTATCACTGGAATGCTCTATGGAACGAAGGGATACATGGATTAATGAGTGGA AGCTGGACCTTCAGGGAATGTGCAATCAGAGGTTTTGCTACAGAAAGATCAAAAGACTTT TACTTTCAAGCAAGGTTGGGCTTTTCCTATGGGATCCTCCCCTATAGTGAGANNNNNNNN NNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNANNCNNNNNNCNNCANNCAAN ANNNCCNNCCGGCNNANCAACACCACCCAACCACCAACCCCAAAACAAAAACTATCCACA ACNAAACAAAACACCCCCACACACACCCACACAAAAAACCACCCCCCCCCCANCANCACA TAAACCAACANCCAAANAACACCACCGACAATCCAACAAAACAAAACAAACCT |
| GenBank Accession | AL950967 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5086063 - go to primer design |
| BLAST e Value | 4e-53 |
| Hit Clone Code (BAC ID) | F14F8 |
| Hit Gene Code | At5g15630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 329F09 |
Gene hit At2g28780
| Sequence (A. th genome BLAST matches underlined) | >70-K016059-022-332-F09-8409 TTTCCCGGACTGAAGCCTTTACATTGAATATAAATTATTAGTTTTCTATTTTATTTTTCT TAATATTATCATAGAATCCCATGCCATTGCTAGTAGGTTGATTTAATACTGTCAAAGAAG AAGTATATAATCTTATAGGGATTATGTTAATTAATCAAAAGGGAATCATATTTTGTCTGT GATGCGACACAGTTTGTTCGCAATATTGGGAAGAATTAAGACAAAATTTTCGGTGGTTGC TGACATAAGTAGGATTTTATATGTAATAATGTGGTACGGAATAAAGTTAGCAACACACTT TAATACCCACGTCAACGTGTTTATGTGACTGTATTACCAAGTCCACCAACATGTTTGTTC CTCAAATCTATTTCTAACACGTATATATATGTACAATGGTTTATCAAAAAAAAAATATAT ATGTACTATGTCTCAAAAATCTTTAAATTTTTAACCAACCTAATCATTCCTCTTTTAAGG GAAAAACCATCTCAAATGATGTAACATTATTCTAAATCGGGAAAATTCTAAATATAGCTA CTTTGGTTTTCACATGCAAAAATACAAACACTTAAGTTAGTGTTTGAAACAATAAAGACC GTACTTCTACGACTAAGTACGTAGAGAGTAACGTTACATATACGTAAATAATTCAAGTTG GGATAATTTGATATATTGAAAGTGATGAGAAAAAGGGTACCTCGACAGTACCCAACCGAG GTAGTGGGACGAGTAGTGCAAAAACCAAGCTAAACACCAAGCG |
| GenBank Accession | AL950966 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12342075 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F8N16 |
| Hit Gene Code | At2g28780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-hydroxybenzoic acid efflux pump subunit |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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