SimpleSearch - Line and FST details
Line specific information
| Line ID | 336D12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432208) |
| Segregation Analysis | 50:34:31 |
| Confirmed for Hit | At2g19800 At2g32600 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3676, 3794, 3833 |
Gene hit At1g18773
| Sequence (A. th genome BLAST matches underlined) | >92-K016157-022-336-D12-8409 CTGATAGAGAGGCTGTACTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAG CTGGTTTGACTTATGAATTCAAGGTATGAAATAGTTATCAAATCAAATACTCATGTTTGA TAATATAACAGAGCAGAGAATTCAGATACTGATCCTCAGATTTGATGTTATTAGCATACT TTGTGAATCATTTACGGATATGCAAAAGTCATGTGTTTGATCTGTCCTCAGATTTGCTAA TGTTACAGTTTGGAGTTGTGTCCTGAGCTATGGGAT |
| GenBank Accession | AL951465 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6475005 - go to primer design |
| BLAST e Value | 1e-145 |
| Hit Clone Code (BAC ID) | F6A14 |
| Hit Gene Code | At1g18773 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | acyl thioesterase-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g19800
| Sequence (A. th genome BLAST matches underlined) | >92-K016135-022-336-D12-8409 TATCATGAAATTTGCCGGACTGAAGCCATTTACATTGAATATCCAAACACAGTACTCTGA TCATGGTTTACTAAGAGAGACTTGCTCTTTGACTGAAAAACAAATCTGTTTTGACATGGA TTCTCAAAGCTGTGATCTCTACGGATGTATTAGCTCACTATGGGATCCCNCCTATAGTGA GANANGGNANATTTTTCNTCAGCGGTGTATATTTTTTATGATATAGCAGAATAAGACATG TACCATGGATTAAGGCAGTGAGATGGAGCCAATCTTCGTCGGGATAGTCCCTTCGAATGG CTTCAGCGGTTTGGAGAAGGTGTTGAATTTGAGGCTCATCAAGATCCGGATCGCTTTCAT CAACAACATTGTTCAATAACTCACAACATTCCCATATACTCATTTCCATCTTGTTAAGTT TTCCATACTCTTTCCTCCTCTTCTTCACCTGTCCAATTGTTTGAAGATCGATTTTCAATA AACATTATTTACTTATAAATTTAATTAACTA |
| GenBank Accession | AL951464 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:8532384 - go to primer design |
| BLAST e Value | 4e-164 |
| Hit Clone Code (BAC ID) | F6F22 |
| Hit Gene Code | At2g19800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myo-inositol oxygenase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g32600
| Sequence (A. th genome BLAST matches underlined) | >92-K016135-022-336-D12-8409 TATCATGAAATTTGCCGGACTGAAGCCATTTACATTGAATATCCAAACACAGTACTCTGA TCATGGTTTACTAAGAGAGACTTGCTCTTTGACTGAAAAACAAATCTGTTTTGACATGGA TTCTCAAAGCTGTGATCTCTACGGATGTATTAGCTCACTATGGGATCCCNCCTATAGTGA GANANGGNANATTTTTCNTCAGCGGTGTATATTTTTTATGATATAGCAGAATAAGACATG TACCATGGATTAAGGCAGTGAGATGGAGCCAATCTTCGTCGGGATAGTCCCTTCGAATGG CTTCAGCGGTTTGGAGAAGGTGTTGAATTTGAGGCTCATCAAGATCCGGATCGCTTTCAT CAACAACATTGTTCAATAACTCACAACATTCCCATATACTCATTTCCATCTTGTTAAGTT TTCCATACTCTTTCCTCCTCTTCTTCACCTGTCCAATTGTTTGAAGATCGATTTTCAATA AACATTATTTACTTATAAATTTAATTAACTA |
| GenBank Accession | AL951464 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:13833753 - go to primer design |
| BLAST e Value | 1e-56 |
| Hit Clone Code (BAC ID) | T26B15 |
| Hit Gene Code | At2g32600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hydroxyproline-rich glycoprotein family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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