SimpleSearch - Line and FST details


Line specific information

 
Line ID 339A12
Vector Used pAC161
Line Availability available as T3 set from NASC (N432460)
Segregation Analysis 50:45:29
Confirmed for Hit At2g45420
Parent of DUPLO pair 12485
Parent of pair(s) none

Gene hit At2g24190

 
Sequence (A. th genome BLAST matches underlined) 
>89-K016160-022-339-A12-8409
TGATCTGANATTTCCCGGACTGAAGCCATTTACATTGAATATGTATACAAAACAAATTCT
AACTCGTAAAGTGTATACATAGGTGGTGAATCTACAGGCAGAAGTTTCTTACTTACAAGC
CCATTTGGCATCGCTATGGGATCCTCCCTATGGCTGAGATGGTGTTGAGACATTGAATTA
ACGAGCTTGATATTTCTGATCGAAGTATTGTCTTACATCAGTTAGATGGCTCTGATCCTG
TTAGTGACACTTCTCTTGCTGAGATTGTGAATGCCCATTTCCGACAACTCCAGATCTTGG
TACTATTAGCATCCTCTGGTAGAACTCATAATAAGCAGATAGTCTCTGTGTAATGCTGAC
TGATCTTTTGATTGTTTTGACAGATCAATAATGCTGGGGTTGGAGGAGCAATCACTGATG
TTGATGCTCTAAGAGCTGGGACAGGGAAAGTAAGTATCTTGTGATATAATTTTCGATAAA
TCTTTGTCAAGTTTAATGCTTTCTTGTTACTTTATACATGGTAGGAAGGTTTCAAGTGGG
AGGAAACTATCACTGAGACTTATGAGCTATGGGAT
GenBank Accession AL951852 [GenBank]
Graphic View Graphic view of gene At2g24190
Predicted Position of Insertion Chr2:10284828 - go to primer design
BLAST e Value 4e-149
Hit Clone Code (BAC ID) F27D4
Hit Gene Code At2g24190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g45420

 
Sequence (A. th genome BLAST matches underlined) 
>89-K016138-022-339-A12-8409
TATCATGANATTTCCCGGACTGAAGCCATTTACATTGAATATGTATACAAAACAAATTCT
AACTCGTAAAGTGTATACATAGGTGGTGAATCTACAGGCAGAAGTTTCTTACTTACAAGC
CCATTTGGCATCACTATGGGATCCTCCCTATAGTGAGAGGCCACAGCCTATGCCGCAACC
GCAACCGCTCTTTTTCACTCCTCCTCCCCCTCTTGCCATAACCGATTTACCTGCATCAGT
CTCACCCTTGCCCTCAACCTATGACCTATGGGATCCTCCCTATAGTGAGAGNNANAAANA
ANGAGNANTTACCCCTTTTTTTTCAATTCAAAAATGTAGATGTCCGCA
GenBank Accession AL951851 [GenBank]
Graphic View Graphic view of gene At2g45420
Predicted Position of Insertion Chr2:18719991 - go to primer design
BLAST e Value 2e-83
Hit Clone Code (BAC ID) F4L23
Hit Gene Code At2g45420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LOB domain-containing protein 18
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37