SimpleSearch - Line and FST details
Line specific information
| Line ID | 351D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433644) |
| Segregation Analysis | 50:46:44 |
| Confirmed for Hit | At1g04880 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 48 |
Gene hit At1g04880
| Sequence (A. th genome BLAST matches underlined) | >60-K016250-022-351-D08-8409 GATCCTGTAGATTTCCCGGACTGNAGCCATTTACAATTGATATATTCTGCATCAAGCTCT TGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGAAGCAACGTAT GAGGCTGTGGTTGCAGACCCTATGGGATCTCCCCTATAGTGAGANNCNNNNNNNNNNNNN NNCNCNNATTTTNNNTTTTCNCTTTTATAGTCTCGCTCCCAACAACAATGATATATCTAT CCTTTTTATCTATCCAATCCTCCCTATAATTAGAACAATTCCCCTACTTCCCACTTCTTC TTTTCAACCTTACATAATACCTTCAACTTAATTTCCAATGCGAATATCTACAATAATCCC ATCCCCCCATCAAATATGATCCACTCACCAACGACCCCCCTCCATGAGAAAACGGTATCC CTCCCCTCTAAAAACCGCACAATCTCGTCGATTCGTGTCTTATGGACTAAGGCGACGGAT GCCGAATGACGATGCCATCCCGCTACACTGATTGCATAACCCCCAGCCTACCATCCACCC TCAACAATATACAGGATACAACCGCACGGTCTAAGAAATGCCTTGGATATCGTT |
| GenBank Accession | AL953468 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1378261 - go to primer design |
| BLAST e Value | 6e-46 |
| Hit Clone Code (BAC ID) | F13M7 |
| Hit Gene Code | At1g04880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T8H10
| Sequence (A. th genome BLAST matches underlined) | >60-K016246-022-351-D08-8409 TGATCTGTNATTTCCCGGACATGAAGCCTTTACATTGGATGATCTACCGAGTCATTATAC CTTGCGCTATGGGATGCCTCCCTATAGTGAGATTTTGCGCTATGTTTGTACCCCTCTTGG GGGCGCTATAATATATCCCCCTCCACTCTTTTATTTTCACTCTAATGATACCCTATTACA TATATGTCCTATATTGTAGAAATTGCTCTTTAATTTCGGGTAGAAGATATCCTGGAACTA TAAGACTTATTGTTTATCGCGATCCTCGCCATCGATGGTACAATACGATTCACTTCAAAA TATTTGTAATACACTACCAAAGCTATGGGATCCTCCCCTATAGTGAGANNNNNNNNNNNN NCNCNTNCNCNNNNCNANGNNGANCCNGNCGGGNGCGACCCCGCCCCGGGCGCAGGCGGA AACCCGCGCCTCGATAACCCGCGCCGGCTCGGCAAGCGCGCCCTCAGATCGCATGCGACC GCTTCTGGTGGCAATGCCAACCCACTGCGCTGAGCGTGTAGCCACAAGCCTGGCGTCTGC CTCAGCA |
| GenBank Accession | AL953467 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:21329774 - go to primer design |
| BLAST e Value | 6e-18 |
| Hit Clone Code (BAC ID) | T8H10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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