GABI DUPLOdb - pair details


Details for pair 48
  
  Pair Info Parent 1 Parent 2
Pair ID 48    
Parent loci   At1g76110 [Araport] [TAIR] At1g04880 [Araport] [TAIR]
Gene Annotations   HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain;
Pair-related paper(s)  
Similarity (TAIRv10) 43.3 %    
Gap (TAIRv10) 34.9 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   213B12 / At1g76110 351D08 / At1g04880
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g76110 Graphic view of gene At1g04880
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 48/2a1.05.02
NASC set ID N2102578
Assigned allele   213B12 351D08
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11