SimpleSearch - Line and FST details
Line specific information
Line ID | 353B11 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N433815) |
Segregation Analysis | 50:50:50 |
Confirmed for Hit | At1g18400 At4g10760 |
Parent of DUPLO pair | 2298 |
Parent of pair(s) | none |
Gene hit At1g18400
Sequence (A. th genome BLAST matches underlined) | >82-K016363-022-353-B11-8409 TATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGAATCTTTCCATT ACATGCAGAATTTTTCTCTCAATATTATCCCTCTCTTCTTATCTAGCGGCTATCACTCTC TCATATGAAGAGACTTCTCCGTCTACAAGTATCTGATTCGATCATATATAATGAAAACGT ACCTCGCCTAATGTGCACCTCCCATGGGATCCTACNCTATAGTGAGANNNACNTTNCAAA NTAAAACTCATCTCTTCTTACACGAATCCTACTATATTAATCACTGCATTATTACCTTAT CCCATCCGGGCCCCGTATCTTCCTCCCATCGTAATCTCTCGATCCCTTTCGCTCACCTAC CCTGACATTTTTACATATACTGTGCTACGTGTATATAAATCTAAAAGAATCCGCCACTGA TATAACTATGATGATCCTCTCTATACAATGTAAGCAATTTTACCCGTTCTGCTAAGCTGT GGCTATCAGTGGCTTGGCCTCTTCTGGCTCTCACATGAACAACTTCTCTCTCTTTCTCGN CTTCTTCTTCCTTCTTCTTCTTCAACCTCTTACCTCTTCTCAAAGAACCCTATGGGAT |
GenBank Accession | AL953667 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:6332454 - go to primer design |
BLAST e Value | 1e-19 |
Hit Clone Code (BAC ID) | F15H18 |
Hit Gene Code | At1g18400 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | BR enhanced expression 1 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At4g10760
Sequence (A. th genome BLAST matches underlined) | >82-K016362-022-353-B11-8409 TATTGAACAGATCCAACTCTCTCTCCAGGACTTGAAGCCCTAATTCACGGTAACCGAACC TCATGACATCACCATTACCATCACTTTGTACATGATGAGCCTATTACAGATCCAAATCCT GACCGAACGCGACGATAAATATATATACTCGTTGCATCCCTACACACCTCCTCATTGATG GCGCATACATCGCTACCATCTACGCGATCTCTCACTCAAACTCATCTCTTCTTTCACGAA TCGACCTTTCGTAGCTACACCACCATTACCAGAACCCAAAGTTGAGAAGAAGCATCATCC GATTGTTAAATTAGGAACCCAACTGCAACAATTACATGGGCATGATTCAAAATCGATGCT TGTTGATTCGAATCAGAGAGATGCTGAAGCTGATGGGTCTATGGGATCCCCCTAATAGTG AG |
GenBank Accession | AL953666 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:6623344 - go to primer design |
BLAST e Value | 2e-107 |
Hit Clone Code (BAC ID) | T12H20 |
Hit Gene Code | At4g10760 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | mRNAadenosine methylase |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |