SimpleSearch - Line and FST details


Line specific information

 
Line ID 357C12
Vector Used pAC161
Line Availability available as T3 set from NASC (N434212)
Segregation Analysis 50:41:33
Confirmed for Hit At5g09830 At5g14650
Parent of DUPLO pair 12149
Parent of pair(s) none

Gene hit At5g09830

 
Sequence (A. th genome BLAST matches underlined) 
>91-K016872-022-357-C12-8409
TGATCTGTNATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGATTCATTAAA
GCCATGTGTTGACTTTCAGCTCTGAAACAGAATATAAAAGGTGGTTGTTTGCGTAGTTAG
GTGTAATTTGATGCAGTGTGATACTGAGCTCAGGATTTGATGACGGAGGGGTCCTGATGG
ATTAGCAACTTAGTAGTGAGTGCTCTTGTCGGAAAATTTTATTTGTGTCATGGTTTTTTG
TGAACTACATTGCATATCGAATACATTGAAGCTCTCGTGGCTACCTCGGAATATATATTG
GGATTGGCAGCCGTTAACACGACTGCTGACACGTTTTAGCTGCATTTGCCACCACAATGG
ACAAACATTGCTACGACAAACCTGTTCTGCCATTGTTCCATGTCCCATACCTTCCATAAC
ATCATTCTCCCCATATCCTCCATTCATCTGCGAGGCACTACTAGACTCTTCCCTATGGGA
TCCTCCTTATCGTGAGATAGNGATTCCTTGAAGTGCTTTGAATTCTATCCATTGCAAGAG
ACCTGATCCCCATGCACTATGGGAT
GenBank Accession BX001605 [GenBank]
Graphic View Graphic view of gene At5g09830
Predicted Position of Insertion Chr5:3058490 - go to primer design
BLAST e Value 3e-85
Hit Clone Code (BAC ID) MYH9
Hit Gene Code At5g09830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BolA-like family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX001604 [GenBank]

Gene hit At5g14650

 
Sequence (A. th genome BLAST matches underlined) 
>91-K016872-022-357-C12-8409
TGATCTGTNATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGATTCATTAAA
GCCATGTGTTGACTTTCAGCTCTGAAACAGAATATAAAAGGTGGTTGTTTGCGTAGTTAG
GTGTAATTTGATGCAGTGTGATACTGAGCTCAGGATTTGATGACGGAGGGGTCCTGATGG
ATTAGCAACTTAGTAGTGAGTGCTCTTGTCGGAAAATTTTATTTGTGTCATGGTTTTTTG
TGAACTACATTGCATATCGAATACATTGAAGCTCTCGTGGCTACCTCGGAATATATATTG
GGATTGGCAGCCGTTAACACGACTGCTGACACGTTTTAGCTGCATTTGCCACCACAATGG
ACAAACATTGCTACGACAAACCTGTTCTGCCATTGTTCCATGTCCCATACCTTCCATAAC
ATCATTCTCCCCATATCCTCCATTCATCTGCGAGGCACTACTAGACTCTTCCCTATGGGA
TCCTCCTTATCGTGAGATAGNGATTCCTTGAAGTGCTTTGAATTCTATCCATTGCAAGAG
ACCTGATCCCCATGCACTATGGGAT
GenBank Accession BX001605 [GenBank]
Graphic View Graphic view of gene At5g14650
Predicted Position of Insertion Chr5:4725535 - go to primer design
BLAST e Value 1e-25
Hit Clone Code (BAC ID) T15N1
Hit Gene Code At5g14650 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37