SimpleSearch - Line and FST details
Line specific information
Line ID | 365G02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N435018) |
Segregation Analysis | 50:42:40 |
Confirmed for Hit | At5g10740 |
Parent of DUPLO pair | 2403 |
Parent of pair(s) | none |
Gene hit At5g10740
Sequence (A. th genome BLAST matches underlined) | >15-K026787-022-365-G02-8409 TGATAGTTTAAACCGAAGGAGGGAAACGACATTCTGATCCCCGGGTATGGGATCCTCCCT ATAGTGAGACTTATTACGTCCACCCCATTTTAATTATCACCAAGACCAATCTTAATGTCC TGACTCCTGGGACAAATGAACTATCCTGATTCCTAAACCAGGCTAAGTTTCTCAAGAGTA ATGTATAAGTTCTTGTTAAAAACAGAGAGGGAAGATACCATCAAAAACTCCAAATAGACC AACTATTTCTCCATTGATACCGTCGATCCTAGTTTCAAAAAAGTCTTCCATAGATGATCT CTTGCCAGCGGAGCTTGCATATCCATAGCTAAATTTTCCATTCTGGCTGCAATAGAATCA TATCATGTATGGGATCCTCCCTATAGTGAGACGTATTCATCCCCCCTAT |
GenBank Accession | CR396521 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:3395185 - go to primer design |
BLAST e Value | 2e-140 |
Hit Clone Code (BAC ID) | MAJ23 |
Hit Gene Code | At5g10740 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Protein phosphatase 2C family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX002604 [GenBank] CR396521 [GenBank] |
Gene hit At4g32800
Sequence (A. th genome BLAST matches underlined) | >15-K017044-022-365-G02-8409 TTTTAAATATCATGGTTATTACTCCAAAATGTATTTTACAAGAAACATAAATGAATTGGT CAAGTCGGCAACCCTATGGGA |
GenBank Accession | BX002605 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:15819451 - go to primer design |
BLAST e Value | 8e-33 |
Hit Clone Code (BAC ID) | T16I18 |
Hit Gene Code | At4g32800 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Integrase-type DNA-binding superfamily protein |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |