SimpleSearch - Line and FST details
Line specific information
| Line ID | 365G09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435025) |
| Segregation Analysis | 45:35:33 |
| Confirmed for Hit | At5g61780 At5g21150 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F7B19
| Sequence (A. th genome BLAST matches underlined) | >71-K026821-022-365-G09-8409 TACTTCAGACCTTCCGCTATATTTTGATAGGGGATCCTTCCGATAGTGTGTCGAAACATC TTTTTTTTTGGTGAAAGATGGATCGTAAGACGTTCTCCCTATAGGGATCCCCCCTACCCT AGAGGGATTGGAATTTCCGTTTATTCCAAATGTTAAGTTTAAACATGATCTATTAGTTAG GCTTGTTCGTGTCTAATTTAAGTGCAAGGATTACTTTGCACATAAGGAAAACTCTAGGGC TTCTCAAAGACTTGTTGAAAAACAGGATTTCCCTCACTCTAAATAAGGGTTTCAATCGAC ATAGGTATGGTGNCNANCGACACGNACTTCTGAGAAACGACTTTGATAGTCTTCATTGCT GAGAGGCTTTC |
| GenBank Accession | CR396527 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:3741630 - go to primer design |
| BLAST e Value | 2e-51 |
| Hit Clone Code (BAC ID) | F7B19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g61780
| Sequence (A. th genome BLAST matches underlined) | >71-K017039-022-365-G09-8409 AGTAGATCGAAAACCCCTTACGATTATTCTCTATAGGTCTTCAGTACTGGATTATATCTT ATTGCTATGGGATCCCCCCTATAGTGAGAAGAATCAGGATAAGGTTAGTCCTTACATTGC GGAGCTGGAACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGGT TGGTGTCTCTTAGTCTGTTTCTCTAAATTTGGTTTATCAAAACACGTCTATGGGATCCTC CCTTATAGTGAGANNNNNNNNNANNANCCACCTNCCTTTTCCNCTATCTTCACAATAAAG AGACACACANCTGGTCAATGGAATCCTAGGAGGTTTCCGGATATTACCCTTTGCTGAAAA GCCTCAAGTGCCCTTTGGACTTCTGAGACTGGATCTTTGATATATGTGGAGTAGACAAGC GTGTCGTGCTCCACCATGTTGACGAAGATTTTCTTCATGACAATGAGACTTAAGAGACTC TGTATGAACTGATCGCCAGTCATTACGGCGAGGTCCGTTAGGCCCTCTATTTGGACCCTT GACTTCATGGGCAACTGGGGATCCTCTA |
| GenBank Accession | BX002614 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24822576 - go to primer design |
| BLAST e Value | 6e-74 |
| Hit Clone Code (BAC ID) | MAC9 |
| Hit Gene Code | At5g61780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TUDOR-SN protein 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g21150
| Sequence (A. th genome BLAST matches underlined) | >71-K017044-022-365-G09-8409 GGGATAAGGCTCCCGGACTACTCCTGATACTTGAATGGAACCCTCTGGAACGACTGACAC CTCCACCAAGTAGGTACAAACGTTCTTTACGTCATTGTGGGAAAGAGGACCGGCGAACAA CGAGGCTACCTCTGCTAGCAGATATGAGAACATGACATTAAAGATCAACGCAGAGAATTT ATTTGAAGTACAAATACCCAGAATATTTAACTTACTGCCTATGGGATCCTCCCTTATAGT GAGACNNATAGTGAGANNCNCNNCCNTATATGCTTTTGAGTTTATTCTTTTATATTGGTC GGTGACCGCCGCATTTACATGGAGGAAACCTAACGACAAGGGAGAATTTGAGGAGGTTGA GATCACAGTGCTCAATTACTATAAAGAGCGTAACATTGAAGTGCGTTATTCAGGTGACTT CCCTTGCATCAATGTTGGTAAGCCGAAGCGTCCCACTTACTTCCCCATTGAGGTAAATAA AATGAATTGTTGTTTTTCTGTTTTCCACATATTTTTTTGTAACGGATTATGACAATCGTT TTGGTTTTCATGTTTGCAGTTCTGTAATCTTGTGTCTCTACGGCGATACACAAAATCGCT TACCAATTTTCAGAGGGCTGCCCTA |
| GenBank Accession | BX002615 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:7194618 - go to primer design |
| BLAST e Value | 7e-163 |
| Hit Clone Code (BAC ID) | T10F18 |
| Hit Gene Code | At5g21150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Argonaute family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX002615 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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