SimpleSearch - Line and FST details
Line specific information
| Line ID | 376D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436037) |
| Segregation Analysis | 100:91:89 |
| Confirmed for Hit | At4g10380 |
| Parent of DUPLO pair | 12214 |
| Parent of pair(s) | 3261, 8045 |
Gene hit At4g10380
| Sequence (A. th genome BLAST matches underlined) | >04-K017162-022-376-D01-8409 TGTAGATTCCCGGACATGAAGCCTTTAAATTGAATATATCCTGGACTCGACTCTCCGCAA ATTTCTTTTCTAGGGAATAGAGGTATGGTAAATTATTAGTCATGTAACCTTACTTTACTT GGCGTGAGGACAATGAGCTAATAGTCTTGACTATGATAACATTAATAAAATTAGCTCGCG AGTTGCGTAAATATACTGGATTGCTTTTGTCTTGACGAAAAACAAAACGGTCACGCTTAT TTATACTAAACAAGAAATAGTTAGATTTAATCTGTTTTGTTTTGCAATGACGAATACACA GTAATTAAGTATTACGTCAATTTACTTGAATTGGTTTTGTGAAAGATCTATGTTACGTAT GGTTTGGTTAGGTCTTTGATTCATTTAATTGTCTGTGAGCGCTTTCTTTTTCTGTCCATG ACCGAACCATCGCCACCGGATGGGATTCTTTTAGCGCAATCCACGGCTCTTGTCCTTTTA TCATAACCAATAATATTACTCCCTATGGGATCCT |
| GenBank Accession | CR356312 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:6433459 - go to primer design |
| BLAST e Value | 7e-160 |
| Hit Clone Code (BAC ID) | F24G24 |
| Hit Gene Code | At4g10380 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NOD26-like intrinsic protein 5;1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g27040
| Sequence (A. th genome BLAST matches underlined) | >04-K017168-022-376-D01-8409 GTGGTGAGAAACTATCTTCTAAAGTCAACTGATGTGGGTAACGATATAATTAATACATAC ATTTACGTGTGTATGTTGGAAATGATCATTAAGTATGAAACTATGAATGATGAAACTATG ATTAGGGTTTATAATATATAGTATGAATGGGTTAAAGCTTGTGGTTGACTAATTTTAATA TCATAAAATGAAGATTGAGGAAGAAAAGTGAATATTTATTAAAGTACCAGAAACTCGATG GAGGCGGAGATGAGGAAAATGACGAATGTGGAGAAGAAGGCGTCAGCAAGGAAGCCACCG AGGAGAGCGAGAAGGAAGGCTGTGGCCATGAAAGTGGTCACTTCACTCGACGATCTGGCT ATGGATCCCCCCAAATAGAGAAGGAGAATGGGATTCTTTTAGCGCAATCCACGGCTCTTG TCCTTTTATCATAACCAATAATATTACT |
| GenBank Accession | BX003980 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9389164 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T7N9 |
| Hit Gene Code | At1g27040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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