SimpleSearch - Line and FST details
Line specific information
Line ID | 377E12 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N436156) |
Segregation Analysis | 50:48:35 |
Confirmed for Hit | At2g23070 At3g29035 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At2g23070
Sequence (A. th genome BLAST matches underlined) | >93-K017229-022-377-E12-8409 ATTTGCTTTATTCCTCTCCTCTCTTTTTCTCTGGCTTCTCTTCGAATACGATGCCCTCTC CACTATTCCGCCCGGTTATATCGTGATAGAAATCAACCCCATCGCGCTTGTCTCCAGGAC CATCGTGCGTGAATCCGCATCCATTCGCTTCACGTGAGCGTCTGCGTATCCGAGATTCTT CTTCAACCCTTCTCTAATCCCGCACAACGCACTTCGTCTGAATGACTCTCACACTCTGCG CTTTGAAGATCACCTGATCATTCCAGAGAGCATGGGCATCGCCAATTTCTCCTTTTCCTC CTCCTAAGATAGATGTCGAAAGCTATGGGAT |
GenBank Accession | FR809115 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:9826907 - go to primer design |
BLAST e Value | 1e-10 |
Hit Clone Code (BAC ID) | F21P24 |
Hit Gene Code | At2g23070 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Protein kinase superfamily protein |
Insertion Classification | Promoter |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At3g29035
Sequence (A. th genome BLAST matches underlined) | >93-K017219-022-377-E12-8409 GTTATAAGATCTATTAGTGTCATCTTTGTATATCCTATGGGATCGTTCATATAGTGAGAT GCTGAATTGTGTTTGCATATTCTCATTATTTCCCTGTTTGTAATTAATGATTGTAACATA CCTAAGTAGATAATATTAGATTAAAAATATGACTATGGGATCCTCCCTATAGTGAG |
GenBank Accession | BX004127 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:11035185 - go to primer design |
BLAST e Value | 1e-47 |
Hit Clone Code (BAC ID) | MRI12 |
Hit Gene Code | At3g29035 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | NAC domain containing protein 3 |
Insertion Classification | TS2TE (3') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | CR396619 [GenBank] |
Last Updated on 10.06.2021 13:37 |