SimpleSearch - Line and FST details


Line specific information

 
Line ID 379C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N436319)
Segregation Analysis 28:26:25
Confirmed for Hit At5g04180 At1g17040
Parent of DUPLO pair 12513
Parent of pair(s) none

Gene hit At5g04180

 
Sequence (A. th genome BLAST matches underlined) 
>51-K017231-022-379-C07-8409
TGATCTGTGATTTACGGGACATGAAGCCATTTACTTCGAAACATCTCGACTTATTACTTT
CTACGCGCATCCTCCCTAGAATGAGTCGCGATCCCTGAGGAGAGCTCAAGGCATCTTTGA
TAAGATGTGCCTACACTCTTGATAGGCATCGAGGTACACCCGAACAAGATCCTACATGAT
GGGCATACCGGCCCCACCTACTCCACCTGAGACGACGATCTCTCGAGTAGCCCGCCTTGC
CCGTCACAGTCATGCTGGACCATCAATCCCACCCTATTTACTTCTACGCACTTCTCCCAT
ATAGAGAGGAACTGCGAGATGCTATGGGATCCTCCCTATAGTGAGAGATCTTCCCTGCAT
CCTCTTCCCACTTAACCTTCATGCCGAATCCACGGTTCTTAAGAATAGCCTCTACAGGTT
TGCAATATGTCTGAAGAATCTCTGTAGAATTGTGAACAATGCGAGCTATTTTTGGAGTAA
GATTGATTGGCGATTGCCTCTTCCCTGTCCCGCAAATTTTCCATTCAGCCTTGATACTGC
TCCATTTCGAGGGATCGGCTATCTCACCGGGTTTGTAATGAAATTCAGTCTCTGTCTCAT
CTGCAAAATATCAGGGAGAACAAGAGTCAAAATACTTCTCAGAGTTTTGCATCAATTAAA
TCATACATTACCGTCCAAACATTAAGACGACTATTGCATTCATTTATGTAATGGACTGGG
AATTGAGATTTTACCGGCTA
GenBank Accession BX004330 [GenBank]
Graphic View Graphic view of gene At5g04180
Predicted Position of Insertion Chr5:1148506 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F21E1
Hit Gene Code At5g04180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha carbonic anhydrase 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g17040

 
Sequence (A. th genome BLAST matches underlined) 
>51-K017221-022-379-C07-8409
ATTTCCCGGACTGAAGCCTTTACATTGATGAAAACAGAAGATGATGCTTTTGCCATTGAC
TCTCCTTCACTGGGAATCTCCTGATCCTGTTAACACTTCTTCTTGGACTGAAGTTCCTAA
TGTTATCTACAGCGGCTAAGGTTCCTCTTCAAAAATGGGTTCATGTGGGTTGTGAGGTAG
TAATTATAAGATCTCTGAGGACTCTTATTAATTTGACCAATATCTCTTTTCTTCGGATTT
ACTGATTTCTGTTGTCTCCTATGGGATCCTCCCCGGATAGTGAGAGGACACTATGGGATC
CCCCTTATAGTGAG
GenBank Accession BX004329 [GenBank]
Graphic View Graphic view of gene At1g17040
Predicted Position of Insertion Chr1:5825525 - go to primer design
BLAST e Value 1e-111
Hit Clone Code (BAC ID) F6I1
Hit Gene Code At1g17040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SH2 domain protein A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37