SimpleSearch - Line and FST details
Line specific information
| Line ID | 388C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437187) |
| Segregation Analysis | 50:50:46 |
| Confirmed for Hit | At1g06220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11820 |
| Note | |
Gene hit At1g06220
| Sequence (A. th genome BLAST matches underlined) | >83-K018255-022-388-C11-8409 ATTTCCCGGACTGAAGCCTTTACATTGAATTGGCTTTGCAACATATCTCCGAACCCTGAT GACGAACCGGACCTGAACTACAGGCTAACCTAAGTATAGAGTCTGACGCTCAGCTTATAT GCGCTATTACTCACGAGTCACTCATAATTCTGCAAAGATGGTCTCTACACTCTTCTAATA GGTCGCCTATCACTTGGCTGTATATCTTGTATAGGGGCTCCAGAATAAACTGAACAAATG CTCTTTCTCCCCACCTACTGGAGGACTTCTCTTGAATACCCTAACAACTAATCACTAAGA AGGCCTTTGGTTCAAATTGTTACATCTATCTTAACTTACTCAATTATCTCGTGAACTATC TGCTTCAAAAAGAGAGTTGGTTGAATGAGACTGAAACCTTCTTTCTTCGAGGCGGGACTC ATTCTCCTGTTGCCTTACTAATTCCTGATCAAGCCCCTGCCTCCATATGTCGAGTTGAGC ATCTCGTACCATATCCCAAGCGCGATTGCGCGCCACTTTTCCCTCCGGCTCGCGCACCTC CCAATCGATGCGGGCGGCTATGGG |
| GenBank Accession | BX286069 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:1902046 - go to primer design |
| BLAST e Value | 1e-77 |
| Hit Clone Code (BAC ID) | F9P14 |
| Hit Gene Code | At1g06220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S5/Elongation factor G/III/V family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g05140
| Sequence (A. th genome BLAST matches underlined) | >83-K018251-022-388-C11-8409 TGTCCTGATATTTCCCGGACTGAAGCCTTTACATTGAATACTCTCTTCATTTTTACTTGA GGGACAGTCTGGTTGCTACTATTACTGATATCAAAACGACACTGCTATGCCTAACACATT ATCGGCTCAGGCGGTTGCGCCGATGTATACCAGGGAATTCTACCGGATGGAAATCTAATC GCTGTGAAACGTTTGACAAAAGGCACACCTGGACGAGCAAACAGCTGAGTTTCTATCGGA ACTTGTGATTATTGCTCATGTTGATCATCCTAACACTGTCAAATTCATCGTGTGTTGCAT CGAGGGTGGAATGCATCTCGTGTTCCGGCTATCTACTCTTGGAAGCTTAGGCTCTCTCCT TCATGGTTCCTATGTCCCCCCATAAACTGAACGGAAAATCATATTCGGGCTTTTAGGCTA ACTCAAGCTAAATGCGCCAATTAAATTTTGAACAGACAGANNNNNNNNNGTGGANNNNNN NNAAAATTTATTGGGTNGGTGGAAAAAAAAAGGAAATGGGACTTTCCCCTCCCCCAATTN GGGGGGNNNTNNNNNCAGTTTTCCCCCCTTCCCCCCTTTTCCGCCCGCCCCCTAATAAGG CCCNNCGCCGCCCCAACGCCGTTAGTTAGGCCTCTAGTTCTCCCCCTGGCGTGACACAAT AAACAATATATATAATAT |
| GenBank Accession | BX286068 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1437206 - go to primer design |
| BLAST e Value | 8e-132 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05140 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ROP binding protein kinases 2 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 388C12 |
Gene hit At2g07698
| Sequence (A. th genome BLAST matches underlined) | >83-K018255-022-388-C11-8409 ATTTCCCGGACTGAAGCCTTTACATTGAATTGGCTTTGCAACATATCTCCGAACCCTGAT GACGAACCGGACCTGAACTACAGGCTAACCTAAGTATAGAGTCTGACGCTCAGCTTATAT GCGCTATTACTCACGAGTCACTCATAATTCTGCAAAGATGGTCTCTACACTCTTCTAATA GGTCGCCTATCACTTGGCTGTATATCTTGTATAGGGGCTCCAGAATAAACTGAACAAATG CTCTTTCTCCCCACCTACTGGAGGACTTCTCTTGAATACCCTAACAACTAATCACTAAGA AGGCCTTTGGTTCAAATTGTTACATCTATCTTAACTTACTCAATTATCTCGTGAACTATC TGCTTCAAAAAGAGAGTTGGTTGAATGAGACTGAAACCTTCTTTCTTCGAGGCGGGACTC ATTCTCCTGTTGCCTTACTAATTCCTGATCAAGCCCCTGCCTCCATATGTCGAGTTGAGC ATCTCGTACCATATCCCAAGCGCGATTGCGCGCCACTTTTCCCTCCGGCTCGCGCACCTC CCAATCGATGCGGGCGGCTATGGG |
| GenBank Accession | BX286069 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr2:3362648 - go to primer design |
| BLAST e Value | 3e-146 |
| Hit Clone Code (BAC ID) | T18C6 |
| Hit Gene Code | At2g07698 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATPase, F1 complex, alpha subunit protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
