SimpleSearch - Line and FST details


Line specific information

 
Line ID 393B05
Vector Used pAC161
Line Availability available as T3 set from NASC (N437649)
Segregation Analysis 50:40:33
Confirmed for Hit At5g27380 At1g80320
Parent of DUPLO pair none
Parent of pair(s) 90557, 90576

Gene hit At5g27380

 
Sequence (A. th genome BLAST matches underlined) 
>34-K018296-022-393-B05-8409
CTTCCTGCAATTGAACAAATAAACCAATGATATGATTCAGATTTTCCCAAAGAGTAAAGC
CACAATATTGGAAACTTGACGGCAACTTACTGATTCAGACGGATGATCATTAGGAGTATA
GCCAGATCTGAAATAAACCACTGCGACTGCTTGGCCGCCACTGCAACAATGAAAACTCTT
AACATAGCTTTCAAGATGAAGGTGTAAGTTCTCAAAAAACCACAATGCAAACAAATGCTT
ACACAATAAGGGTTTCATCCTCTTGTACACTCCCTTCTTTTTCGACTTCTGCTATGGGAT
GenBank Accession BX286702 [GenBank]
Graphic View Graphic view of gene At5g27380
Predicted Position of Insertion Chr5:9669049 - go to primer design
BLAST e Value 2e-157
Hit Clone Code (BAC ID) F21A20
Hit Gene Code At5g27380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glutathione synthetase 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g80320

 
Sequence (A. th genome BLAST matches underlined) 
>34-K018292-022-393-B05-8409
TTTCCCGGACTGAAGCCTTTGTGGGAGGAGAAAAACCCTAAAGAGATCGAATCTCATCTG
CACTCATCACTACCTTGTGGTAACATGCCTTTATCCTATCGTTACTCCACGCCTTCATCA
CCAACAAAAAGATTTCACATTTATTGCTATGCCTATGGGATCTCCCCTATAGTGAGGAGC
TNNCNAGACGAGGGCGTAAGCTCTGCCAGAGACCACCAAGCAAACAAGTGGGGACACGGT
AATGGCCCCATCATCGAGCACTCTGGCTTCGGATACGACTCCAGCCAACGTAGGAGTGCG
GAAGACGCACACCGAATGATTGGACAATCGGAGACCTGAGCCCCCAGCTGTGCTCACCGG
CGTCGGGATGGGGGAAAAAACGAAACCTCGCCGGGGGGACCCTCCACACNGAGAGACTAA
GAGAATGCGACTTCACGGAGATTCGATAGCTATCATACAAGATCCTCATCACCG
GenBank Accession BX286701 [GenBank]
Graphic View Graphic view of gene At1g80320
Predicted Position of Insertion Chr1:30197736 - go to primer design
BLAST e Value 2e-64
Hit Clone Code (BAC ID) F5I6
Hit Gene Code At1g80320 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37