SimpleSearch - Line and FST details


Line specific information

 
Line ID 396G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N437997)
Segregation Analysis 50:50:34
Confirmed for Hit At4g25320 At4g15230
Parent of DUPLO pair 2110
Parent of pair(s) 6794

Gene hit At1g01940

 
Sequence (A. th genome BLAST matches underlined) 
>39-K018299-022-396-G05-8409
CTCATCATTGAATTTCGTGCCCCATATGCTATGGGATCTACCCTTATACTAGAGTTTTCC
CCTGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession FR809532 [GenBank]
Graphic View Graphic view of gene At1g01940
Predicted Position of Insertion Chr1:323875 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) F22M8
Hit Gene Code At1g01940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g25320

 
Sequence (A. th genome BLAST matches underlined) 
>39-K018295-022-396-G05-8409
TACTTAACTAAAGCTGTTCTCTCCTAATACCCTGAGCTTTTGGGAAATGTTGTGATGTGC
ATATTCTAATCTACTTCCCCTAAAGTCGTAGCCTTTCTCTTCACTATGGGATCCTCCCTA
TAGTGAGAAAGNAAGAGCATTGTTGCATAAACACTCACTTATACAGAGATGAATCCTTGT
ATGATTGTGAAAAATCTATTCCAAGTTTTTCCTCTGCAGATTTACTATGGGATCCTCCCT
ATAATGAGACAAATGGGACAGGAGAACGTTCGCGCCCACTGGGTGGCTTAAAAGGAGAAC
TTCTCTATCAATA
GenBank Accession BX287081 [GenBank]
Graphic View Graphic view of gene At4g25320
Predicted Position of Insertion Chr4:12955237 - go to primer design
BLAST e Value 6e-46
Hit Clone Code (BAC ID) F24A6
Hit Gene Code At4g25320 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AT hook motif DNA-binding family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX287080 [GenBank]

Gene hit At4g15230

 
Sequence (A. th genome BLAST matches underlined) 
>39-K018295-022-396-G05-8409
TACTTAACTAAAGCTGTTCTCTCCTAATACCCTGAGCTTTTGGGAAATGTTGTGATGTGC
ATATTCTAATCTACTTCCCCTAAAGTCGTAGCCTTTCTCTTCACTATGGGATCCTCCCTA
TAGTGAGAAAGNAAGAGCATTGTTGCATAAACACTCACTTATACAGAGATGAATCCTTGT
ATGATTGTGAAAAATCTATTCCAAGTTTTTCCTCTGCAGATTTACTATGGGATCCTCCCT
ATAATGAGACAAATGGGACAGGAGAACGTTCGCGCCCACTGGGTGGCTTAAAAGGAGAAC
TTCTCTATCAATA
GenBank Accession BX287081 [GenBank]
Graphic View Graphic view of gene At4g15230
Predicted Position of Insertion Chr4:8685512 - go to primer design
BLAST e Value 2e-45
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g15230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pleiotropic drug resistance 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37