SimpleSearch - Line and FST details


Line specific information

 
Line ID 399C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N438238)
Segregation Analysis 50:47:44
Confirmed for Hit At2g20620
Parent of DUPLO pair none
Parent of pair(s) 1667

Gene hit At2g20620

 
Sequence (A. th genome BLAST matches underlined) 
>43-K017893-022-399-C06-8409
ATTTCCATATTTCCCGGACGAACTCCTTGCAGAAGTGGCACTCCATTCCTACAATTCTCA
GACGGTAACTCTTATCTATATTGCTCTTATCCTATGGGATCCTCCCTATAGTGAGAGGAA
ATTCTCGAAATCACCGTGTCATTCTTTCCTATGGGATCCGCCCTATAGTGAGAGGTATAA
TAAAATGAAAGTCCCTTTTGATGGAAAAAAAACTACGATCAGACGGATTTGTAGGTGAAA
GATATAAACAAATTATTCTAATTGGGAAATCTTTATTTCGACGTGTCTACATTCACGACC
AAATGGGGGATTAAATGAAAAACTGCACGATCGATGCCTTGATTCCGC
GenBank Accession BX287302 [GenBank]
Graphic View Graphic view of gene At2g20620
Predicted Position of Insertion Chr2:8892970 - go to primer design
BLAST e Value 3e-29
Hit Clone Code (BAC ID) F23N11
Hit Gene Code At2g20620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF626)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MNA5

 
Sequence (A. th genome BLAST matches underlined) 
>43-K017932-022-399-C06-8409
TCACTATGATTGGACGGAAATTACTCTAAATCACCGTGTCATTCTTTTCTATGGGATCCT
CCCTATAGTGAGACGAGAGACACGCTGTGGGATCCTCCCTATAGCAAGACAATAACGACC
CGCCCGCTGAGAGGCGAAAGCAGAAACAAATTATTGAAATACGGAAATCTTTAATTCGAC
GTGTCTACATGCGCGTCCAAAGGGGGGCTTAAATGAAAAACGACACGATGGATGCCGTGA
GTCCACCTTCCCGGCCAGATGGGGGCTTAGATGACAAACTTCGCGATCGAAGCCTTGA
GenBank Accession BX287303 [GenBank]
Graphic View Graphic view of sequence BX287303 of line 399C06
Predicted Position of Insertion Chr5:26115152 - go to primer design
BLAST e Value 4e-13
Hit Clone Code (BAC ID) MNA5
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37