GABI DUPLOdb - pair details


Details for pair 1667
  
  Pair Info Parent 1 Parent 2
Pair ID 1667    
Parent loci   At2g20620 [Araport] [TAIR] At4g29550 [Araport] [TAIR]
Gene Annotations   Protein of unknown function (DUF626) Protein of unknown function (DUF626);
Pair-related paper(s)  
Similarity (TAIRv10) 46.4 %    
Gap (TAIRv10) 22.1 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   399C06 / At2g20620 SALK_081332 / At4g29550
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At2g20620 Graphic view of gene At4g29550
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1667/1a1.25.2
NASC set ID N2102924
Assigned allele   399C06 SALK_081332
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11