SimpleSearch - Line and FST details
Line specific information
| Line ID | 403F05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N438657) |
| Segregation Analysis | 50:45:42 |
| Confirmed for Hit | At1g55030 At5g44620 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7054, 9083, 94484, 94488, 94493, 94494 |
Gene hit At1g55030
| Sequence (A. th genome BLAST matches underlined) | >38-K017864-022-403-F05-8409 TGATCTGTAGATTTCCCGGACTGNAGCCATTTACAATTGATATATCCTGGCAATCCCTTA CATTTACATGTATATAGCCATTTACATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTG AAATCCCTTAAAACCCTTTATCTTCTATGGGATCTGCCCTATAGTGAGAGGATAGGGTAC GCGCACTACCAAGGGTTTTGCAACTCCGAAATGGAGAAGGGCGCAGCGGGACTATAGATG AAACGACTGCTTGATGATCCGCCAAATACGATCCGTCGTATTTATAGGCGAAAGCAATAA ACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGG GGCTTAGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCGAGGGGCCCCCCA A |
| GenBank Accession | FR809657 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20531374 - go to primer design |
| BLAST e Value | 8e-27 |
| Hit Clone Code (BAC ID) | F14C21 |
| Hit Gene Code | At1g55030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNI-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g44620
| Sequence (A. th genome BLAST matches underlined) | >38-K017818-022-403-F05-8409 ATTGAATATATNCTTGTCAAAATGTAAGNCGAAGTGTTTCACAGTGGTACAAGCTCCTAT GGGATCCTCCTTATAGTGAGAGGATGGGATACCCTCTATATAGAGATCTATGGTATCCTC CCTATGGTGGGGTCCCCTGACTTGGTATCTCAAGATAGGACTTTTTTATAAACCGACTGT TTTCTTCCCGCCATATTTATAGGAGAAAGCAGTAGAAATTTTTTTCTGGTGAGGAAATTT TTATTTCGACGTGCCTACTTTCACTTCCAAATGGGGGCTTACATGAAAAACTGCCCGTTC AATGCTTTGATATCCCATTGGGGGAGGACTGTATGGGGGCCGATAGTGGGAAGGCCCCTG GGACCCGGCGGTAACGGGGGATACCGCCGTTCGCATTTGGGGTAGAGCCGAGGACGGGCA CCAACATTTGATGTAGCTATCACAGTTAGGCCATGAGTCAGCTGGTCCTTGCGACTTCGG TTTCGAAAGAGACTGGAGATGTCTGGCATTTTTGTTCGTAGATGTGATGAACAGAACTCG CCGACGGGGAGTGATCGTCGTTTATAAATGGTGAATTTCGAGATCCGCTCCATGTAATGA GCGAGGCTATTTAGAAAGGGTTGTACATGGGGAGTAAAAGGAAGCGCTGTGATTTACCTA ACCGGGGCGGGCTTCTGTATAAGTAATGGGAAGCCCCCGGGTAGTGAGTTTGTTTTTCAG AGTGAGAA |
| GenBank Accession | BX287661 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:17999055 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | K15C23 |
| Hit Gene Code | At5g44620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 706, subfamily A, polypeptide 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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