SimpleSearch - Line and FST details


Line specific information

 
Line ID 405B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N438806)
Segregation Analysis 50:49:48
Confirmed for Hit At3g55550 At1g08130
Parent of DUPLO pair none
Parent of pair(s) 6356, 6357, 6361, 7805, 10606, 87744, 87763, 87783, 87845, 87846, 87849, 87850, 87851, 87859

Gene hit At3g55550

 
Sequence (A. th genome BLAST matches underlined) 
>74-K017866-022-405-B10-8409
TATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATTCTAACTATATCACCA
CACCTATCTTTATGGGAACTCACCGTATAGTGAGAATCGTAAGAGAGAAGAGACAACTTT
GGTTTCTCTGAGAATGGAGAAAGTTTAACATCTAACCTTTTCTTGTTTGAATCGTAATCA
ATCCAAGCTTGAATCACTCTACCACCATCAAGGAAAAGCTCCTTTTTGGTTGAGTTAGCG
AGGAAATAGCCAGCAGGAGTCGAAATACTCGATTCCATACTGTTTATATCGATTCCTACA
TGGTTATCATTAATGTCCTCAAACTCCAAATCCCTGACAGTATCGAATTCCACAGCGAAG
AAGTGGCTATGGGATCCTCCCTAATAGTGAG
GenBank Accession BX287830 [GenBank]
Graphic View Graphic view of gene At3g55550
Predicted Position of Insertion Chr3:20601362 - go to primer design
BLAST e Value 3e-153
Hit Clone Code (BAC ID) T22E16
Hit Gene Code At3g55550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Concanavalin A-like lectin protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g08130

 
Sequence (A. th genome BLAST matches underlined) 
>74-K017820-022-405-B10-8409
TATCATGANATTTCCCGGACATGAAGCCATTTACCAGAGTTTCTACCTGTAATTACTAAT
TAGGGTTAGTCCAAATCTTTAATAGATCCCAATGATCAAATTTTATTTTTTTGAAAACTT
CAAATTTGGACAAAATTGTGATGATTATTTCAAAGGTTATTGTAAATATAATATTTTATA
AATTACATCAAATGCTATCACTAATGGATACTCATACACTAAACTGTGCCCTATGGGATC
CTCNCCTATAGTGAGANNNNNNNNNANANACTCNNTNNCCTNNTGTNNATATCAATTCCT
ACATGATTATCATTAATGTCCTCAAACTCCAAATCCCTGACAGTATCNAATTCCACANCN
AACAATTGACTATGGGATCCTCCCTATAGTGA
GenBank Accession BX287829 [GenBank]
Graphic View Graphic view of gene At1g08130
Predicted Position of Insertion Chr1:2548016 - go to primer design
BLAST e Value 1e-96
Hit Clone Code (BAC ID) T6D22
Hit Gene Code At1g08130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DNA ligase 1
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37