SimpleSearch - Line and FST details


Line specific information

 
Line ID 405H12
Vector Used pAC161
Line Availability available as T3 set from NASC (N438880)
Segregation Analysis 100:98:69
Confirmed for Hit At4g21090
Parent of DUPLO pair 9493
Parent of pair(s) none
Note

Gene hit At1g20490

 
Sequence (A. th genome BLAST matches underlined) 
>96-K017820-022-405-H12-8409
GACGCATCCGATGGGATGCCTCCCTATGATGAGAAGGAGCTTGACACATATACACCATCT
ATGCCCGTATCATGAAATGGGTTAGCCAGTCATAGATATGTGATGCTGAATGATAAGATA
TGTTCACCAACCAATAGAGAGAATTAAAGGGTTTTGCTTTGGCTCCAGGCACTATGGGAT
CCTCCCTATAGTGAGACTATGCGGATCCACCATTCTGAGGTTGGCTCCACCGTGTTTGGT
ACCTATGATTAGCGGCGCAGATCAGCTCAAGGACAAGTACGATTTGACCTCCCTGAGAAA
GGTTAGGTGTGGTGGAGCACCGTTGAGCAAGGAGGTTATGGATAGCTTCCTATGGGATCC
TCCCTATAGTGAGA
GenBank Accession BX287906 [GenBank]
Graphic View Graphic view of gene At1g20490
Predicted Position of Insertion Chr1:7099095 - go to primer design
BLAST e Value 8e-58
Hit Clone Code (BAC ID) F5M15
Hit Gene Code At1g20490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AMP-dependent synthetase and ligase family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 405H09

Gene hit At4g21090

 
Sequence (A. th genome BLAST matches underlined) 
>96-K017820-022-405-H12-8409
GACGCATCCGATGGGATGCCTCCCTATGATGAGAAGGAGCTTGACACATATACACCATCT
ATGCCCGTATCATGAAATGGGTTAGCCAGTCATAGATATGTGATGCTGAATGATAAGATA
TGTTCACCAACCAATAGAGAGAATTAAAGGGTTTTGCTTTGGCTCCAGGCACTATGGGAT
CCTCCCTATAGTGAGACTATGCGGATCCACCATTCTGAGGTTGGCTCCACCGTGTTTGGT
ACCTATGATTAGCGGCGCAGATCAGCTCAAGGACAAGTACGATTTGACCTCCCTGAGAAA
GGTTAGGTGTGGTGGAGCACCGTTGAGCAAGGAGGTTATGGATAGCTTCCTATGGGATCC
TCCCTATAGTGAGA
GenBank Accession BX287906 [GenBank]
Graphic View Graphic view of gene At4g21090
Predicted Position of Insertion Chr4:11257919 - go to primer design
BLAST e Value 2e-46
Hit Clone Code (BAC ID) F7J7
Hit Gene Code At4g21090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MITOCHONDRIAL FERREDOXIN 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37