SimpleSearch - Line and FST details


Line specific information

 
Line ID 407F09
Vector Used pAC161
Line Availability available as T3 set from NASC (N439045)
Segregation Analysis 50:45:433
Confirmed for Hit At4g23200 At3g23280
Parent of DUPLO pair 12891
Parent of pair(s) 10293, 10296, 10338, 24185, 75316, 75318, 75322, 75325, 75335, 75338, 75339, 75342, 75350, 75441, 75464, 75484, 75569, 75572, 75573, 75576, 75577

Gene hit At4g23200

 
Sequence (A. th genome BLAST matches underlined) 
>70-K017978-022-407-F09-8409
GGACTATAGCCATCATACTCTATACCTTGTAAACTTCTCCTATCCACCTTGACCTATAGG
GATCCTCCCTATAGTGAGACATCATCCGTTTTTAGGGCACGTTAGTTAATGGAACAGAAG
TTGCAGTGAAGAGGCTATCGAAAACATCCGAACAAGGTGCACAAGAGTTCAAGAACGAGG
TTGTTCTTGTCGCCAAACTTCAGCATAGGAATCTTGTTAAGCTTCTTGGGTACTGTCTGG
AACCAGAGGAGAAAATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTATGGGATCCTC
CCTATAGTGAGANNANANNNAGANNNANNANNNNNNNNNNNNNNNNNNNNNNNANNAAGA
AAAAAAANNNAAAANAAAAAAAAAAAAAAAANACGTTNGGAGAAAAAAACAAATAACGAT
ACGGAGAGATAATAGGGGAAGGGAATAAACAAATTAATTCTAATTCGGAAATCGCAATTT
CAACAGAGGCAACATCCCACGAACCCAAGGGGCCCTTAGATGCACCAACTCCAAGAG
GenBank Accession BX288033 [GenBank]
Graphic View Graphic view of gene At4g23200
Predicted Position of Insertion Chr4:12146625 - go to primer design
BLAST e Value 9e-116
Hit Clone Code (BAC ID) F21P8
Hit Gene Code At4g23200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cysteine-rich RLK (RECEPTOR-like protein kinase) 12
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g23280

 
Sequence (A. th genome BLAST matches underlined) 
>70-K017953-022-407-F09-8409
TCATTAACAAAACTTGGATTCGCTACTATAAAATGGGATTACACCATATGAGATACCGAC
ACCATAAGTATTCGCTGACCTCACATTCATCGAGTTGTATGAGAAGACCAACTCTTACCG
CCATGAGAAAGAAGTAACTTAACAGTGTTCTCAATTACCTCTTTGTGCAGCTTGGTGCAG
AGGAGTCACGGCGTGACGACCTGAAGACAGCACATATGACCCCATTACCTCACTCTCACT
CTAAAACCAAAGCATCTAATATCACAGAACTGATTCAAAATACCTCTAACAGAATCAACA
ATGTCTCAAACTCCAAACACATTCCACTAACTTCAACTTAACAAGTTGTTACATTTCAAT
GATTATCACCGGATCCTAACTAAGCATTGAGTCAGCTACTCAAAGCTATGGGATCCTCCC
TATAGTGAG
GenBank Accession BX288032 [GenBank]
Graphic View Graphic view of gene At3g23280
Predicted Position of Insertion Chr3:8322340 - go to primer design
BLAST e Value 7e-166
Hit Clone Code (BAC ID) K14B15
Hit Gene Code At3g23280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37