SimpleSearch - Line and FST details


Line specific information

 
Line ID 410B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N439283)
Segregation Analysis 50:50:37
Confirmed for Hit At5g07620
Parent of DUPLO pair 2496
Parent of pair(s) none

Gene hit MBK20

 
Sequence (A. th genome BLAST matches underlined) 
>50-K017995-022-410-B07-8409
TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTTAACAGATATA
ATGATTGTTAGCTGTAAGCTTTGTCTCTACTCCTTAATTAGACAGTTGACACAGATGATG
AAATTCACTTTATTCAACGGCTCGAAATCACCCATTTTTGGTTCCACTATCCCATGTCAT
CATCATTTTAAATTGTTCACCACCAAATACGATTGTGAAAGCATACTCGTTCATAATCAT
AATAAATTGCACGATATATATTGGCTATGGGATCCTCCCCTATAGTG
GenBank Accession BX288192 [GenBank]
Graphic View Graphic view of sequence BX288192 of line 410B07
Predicted Position of Insertion Chr5:2409935 - go to primer design
BLAST e Value 1e-111
Hit Clone Code (BAC ID) MBK20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g07620

 
Sequence (A. th genome BLAST matches underlined) 
>50-K017999-022-410-B07-8409
ATTTCCCGGACTGAAGCCATCTTTGTCTTTTGTCGCGTACTATTTTTGTTTTATTTTCTG
TCATTTTCCACTTCTTTAGTGTAGTAAGAACAAAATTTGACACTAAGAACAGTCAATCTC
AGCAAATACCTATGGGATCCTCCCTATAGTGAGAGACCTCTAAATTTTTGTATTCATATT
TTGTTGGTAGTCACTCTTTCTTTTTCTCCAGATTGACTATTATACTCTATGCTGTTCCAT
GTGCACTTCCTGTGACCGGCCGCCGTCTTTTCCTTGTGGGGGGACTAAACTTATATACTA
TTCTCGGAATCTCTATTTCCAAACGTCTGCATTCCCCCCTATAGGGGGGCTAACATGAAA
AACTTCACGATCCATGCCTTGATT
GenBank Accession BX288193 [GenBank]
Graphic View Graphic view of gene At5g07620
Predicted Position of Insertion Chr5:2408133 - go to primer design
BLAST e Value 2e-46
Hit Clone Code (BAC ID) MBK20
Hit Gene Code At5g07620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37