SimpleSearch - Line and FST details
Line specific information
| Line ID | 413C02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N439578) |
| Segregation Analysis | 50:50:44 |
| Confirmed for Hit | At4g16070 At1g66370 |
| Parent of DUPLO pair | 11940 |
| Parent of pair(s) | 9713, 10815 |
Gene hit F6D8
| Sequence (A. th genome BLAST matches underlined) | >11-K025921-022-413-C02-8409 CGGACAGAAGCATTTACAATTGAGTATATCCTGAGTGGATCCGTTATTCATATAGGCAGT GAGCCTAGCACGACTTGCGCCCAAAGGGACCCGCCCTAACTAAAGGCTGTTATATAACTT ATCAACAGGACTTTTTTATACCACCCTAATTTTTTTCTCTGACCCCGCGGGGTAATTTAA CTGTCTATCTCAATTACGATTTTATGCTATGTTGAGTTTATATTTCTTCTGATTATATCA AATACATTTCCATATCTATAGATCTTCTTCATACACTGTAAAAAAAATCTAGTATTTCAA CTTTTGTATGTATTAAAAATTGCAAGATTTTGTAATCATGGGATCCTCCCTATCGTGATT CTAGTATAACACTGTAGTCTGACAAGAAATTTGCTTTACTTGAAATAATATTTCCTCTGT AGGTGGGGGGGGGGGAGAAAAAGATTTTTCCTCAATCATCATCATCATCCCCAC |
| GenBank Accession | CR397028 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19572656 - go to primer design |
| BLAST e Value | 8e-38 |
| Hit Clone Code (BAC ID) | F6D8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g16070
| Sequence (A. th genome BLAST matches underlined) | >11-K017998-022-413-C02-8409 GAAGTGCTTGCCTGATGCTGCTATATCCCAAGCATACAAGCAGCTGCCAGCTGCTCAATT TGAAATTCACTGCATATTAACAATTTTTGACCCCGAGAACTAATTGACATATAAAAAGCT GAGCATCACAATTAAAGGACACGACGCATATCATATCTGAAGACTAGAAAATACCCCCAT TAATCCTTAAATTGGGTGAACCTGGTGCAAAAGTGAAACA |
| GenBank Accession | BX288388 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9098464 - go to primer design |
| BLAST e Value | 2e-58 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g16070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | lipase class 3 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g66370
| Sequence (A. th genome BLAST matches underlined) | >11-K025920-022-413-C02-8409 TTAGCAGGCCGACCAAGCAATCTACCAGCGATCAAGGACCACCTAAACATTGTGAAACAA TATACATGAGAGTTTCTAGTATTGAACCGCGATCCCTAAAGAAATAGTATTGACTATCGA GAAAACAATACCTATTTCCTAGAAGTTTATGAAGGCGAAGAACAAGATCAACTTCATCGG AGCAGAGTTTTCCTCTCTTAATACTTGGCTTCAAATAATTCAACCATCTAAGTCTACAAC TCTTTCGGCACCGATTGAGACCTATAAAACCAAAAGTCGAATTTACTATACCTACTTAGA TTTCTTTTGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR397027 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:24754222 - go to primer design |
| BLAST e Value | 7e-171 |
| Hit Clone Code (BAC ID) | T27F4 |
| Hit Gene Code | At1g66370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 113 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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