SimpleSearch - Line and FST details
Line specific information
| Line ID | 419E07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N440183) |
| Segregation Analysis | 50:50:47 |
| Confirmed for Hit | At4g22900 At3g15570 |
| Parent of DUPLO pair | 7967 |
| Parent of pair(s) | 12238 |
Gene hit At4g22900
| Sequence (A. th genome BLAST matches underlined) | >53-K018100-022-419-E07-8409 ATTTCCCGGACTGAAGCCTTTACATTGAATATATACATGAAGCCATTGGTAATTACTCTC TCCGGACATGGCTCCACCGTAAGGACTGAACCGATGTGAAACTCTCCAATTTTTGCGCCA TATCTTCTCAAACTCCCACACCTTAACTTGACCGTGTCAATATCGATACCAGAGAAATTA GAAGGGAGATAGATTTTCTGAGTGACGCCTGTGTTGAAATTGAGCTTAAAGTTTCTAATG GTGTAATCTCTGATCATGAGATCAAGAAGATGTGTAGATTGAATCAATTGAGACTTAGAT TGGTGGAATGATAAGAGAAGTATCATGATGATGATACAAAAAGAGAATGAATCCATAAGA GGAACAAGAGAATCTATGGGATCCTCCCTTAATAGTGAGAGNNNANNNNNANNAGNATTT TCNTTTTTTTTTTCAATTCAAAAATGGTGATNTCCCCACCATTCTATTAAACCCCCACCC CCCCCAACCCCCAAAACAACGAACAAAAAAATTTCTTAATTGTCCTTAAATCCCAAAAAA AAACAAAAATGAGGCGGGTGCACACGGCCCGTGCGGGCCGGGGTAAAAGTGGGGACCATA TAAGAAGAAAGGGGGAGGGGACGAAAAAAGGGGGGAAGAAAGGGGTGGGAACAATCGCCC CACGGACCGAACGAAGCGGGGGAGGGGAGGCGGGAGCCCGGGGAAGGGGGGTGGGGAGAG CGACGGCAATGCAGGGGTAAACGGGGGGGGCGTAGCGCGGAGGGACGTGAGTGGCGAGAC GGCGCAGACACAAAGGCGGGAGGGGAGGGATGGGAGCACAAACCAACAAGCGAGCAGGAG GCCAAAGAGGAGAGAGAAGAGAAGAG |
| GenBank Accession | BX288753 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12010527 - go to primer design |
| BLAST e Value | 1e-179 |
| Hit Clone Code (BAC ID) | F7H19 |
| Hit Gene Code | At4g22900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein, putative (DUF1191) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g15570
| Sequence (A. th genome BLAST matches underlined) | >53-K018139-022-419-E07-8409 TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCATGGAGACCGCCCT ATACTGAGACTGCGACAGTAATCGCCCCTGAACCTTTGACCATGAGATAGAGCTCCTATA GTGAGACCCCCCAATTTCGCGACCTACACATGGTCTATTTCGGCGGATCAGTCACCGTGA TCCAATCCGGAGGATTGCAGACCCTTTTTTTTCGGGACCATCCAGCGCTCATTACGCTTC AAAATGGCTCCCGGAGCTCTCCGGCGATGTCACCTCCATAATTTCCGCCAACTCCTTCCA ATCCAACATCAACCGCTGTGACTGACAAGCCAGAGAGCGTGACTGCAACTCTAATGGAGA ATGAGTCCATCGGAGAAACACTAGACGGATCCTCCCCCGCTAGAAAGACGCTGTTCCTTG CAATTTCCTCCTCCGTCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTT AACGGAGCTTGAAACCAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTAT GATACCTTCCTTCAGCTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCT CGTGAACAGGTTTTCTGGATTGGATAGTGAAAGTGTTAAAACCGCTGCGGCTCTTGTTAA AGTGGCCCAGCGTTGATGACTCCTACCTCGCTGAAACTGCCGGTGACGGGGGTTTAGCTT TACCGGATTTATTTCCTTAATCACAGCTCTTCC |
| GenBank Accession | BX288754 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:5271682 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MQD17 |
| Hit Gene Code | At3g15570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phototropic-responsive NPH3 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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