SimpleSearch - Line and FST details


Line specific information

 
Line ID 420C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N440252)
Segregation Analysis 50:49:49
Confirmed for Hit At5g47635 At4g30780
Parent of DUPLO pair none
Parent of pair(s) 1567, 66861

Gene hit At5g47635

 
Sequence (A. th genome BLAST matches underlined) 
>27-K018140-022-420-C04-8409
ATTGATATATCCGGACATGCGTCAATTAGAAATGTTTTCGGTTCCATACAAAAGCCTATG
GGATTCTTCATATAGTGAGACACTGGATCCAAAAGGAGGTCCAAATGGATTAAGGCTGTT
ACTGATGAATTGGGAGAGTTTGAAATCGATCTTCCCTCCCAACTCCATGCGATTCCACAC
CTTGAAAACACTTGTTTCATCAAGCCAGTATATGTGCCTATGGGATCCTCCCTATAGTGA
G
GenBank Accession BX288824 [GenBank]
Graphic View Graphic view of gene At5g47635
Predicted Position of Insertion Chr5:19307603 - go to primer design
BLAST e Value 6e-74
Hit Clone Code (BAC ID) MNJ7
Hit Gene Code At5g47635 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pollen Ole e 1 allergen and extensin family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g30780

 
Sequence (A. th genome BLAST matches underlined) 
>27-K018101-022-420-C04-8409
TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATATGTCAGTGCAATATA
TCTCTCTTGATTCTCTATATCTCAGGACCTGTCCTGAGATACCATTCCCCAATAGGATGG
CCTTTTGATTCAATTGGATCCTCACCAATACATAGCGGAGCGTTTTAGGATGGAGATGCA
ATAGCTATCTCCGGCTGGCAGACTTATATCGGAACATATCCATCCATGCACATTGAACCA
CCTCTTTCAAAGATGATTGTTCATTATCCCTTGAGCACATTGCAGAAAATGCTGCCTAAC
AGATCACAGGGAGACTATCGTTAGCTGAAGCTATGGGATCC
GenBank Accession BX288823 [GenBank]
Graphic View Graphic view of gene At4g30780
Predicted Position of Insertion Chr4:14991922 - go to primer design
BLAST e Value 8e-36
Hit Clone Code (BAC ID) T10C21
Hit Gene Code At4g30780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATP-dependent DNA helicase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37