SimpleSearch - Line and FST details


Line specific information

 
Line ID 430G11
Vector Used pAC161
Line Availability available as T3 set from NASC (N441267)
Segregation Analysis 50:50:48
Confirmed for Hit At4g38050 At2g41730
Parent of DUPLO pair 12673
Parent of pair(s) 7916

Gene hit At4g38050

 
Sequence (A. th genome BLAST matches underlined) 
>87-K018148-022-430-G11-8409
AGGAAGATTCTGGTTTGTAGACTTTGAAATTGCAGTTCAACTTATACCTCACTGTCTGCA
GCTATATATGCTCACTATGGTGGACCACCTGTGGATATGCCTCTCTCTATTGTAACACTC
AGGGATGGTTGCGATGGGCCCTTGTCCTTCTTCTTATAAGGATTAATCAGTGCCAGCTTC
TTTGATACACATTTTGACTTTCCATGATGGTTTAACGATACACCCTCACAGATTTCAACG
ATGCTCACTCTCCACGTGGAGTCACCCTATTCCTCACTGCTACTTCGAGTACTCGGGATT
CCGATGGTTCAAGGAAGCTCTTTTGTTTACTTGGCCCCGGTTTTGGTTGTCATCAACTCT
GAGGAGTTCAGAAACCTCACTGAGCATGTAAGTTTGCATATATNGAAATCAAAAGGAGGA
TTTTGAGTTCTTGGAGACTTTGCAATAAACTGATGTTTTAGCTTCGCACAGAAATTTCGG
GACACAATGAGAGAACTACAGGGGGCTATNATTGTTGGTTCATTATTCCAGTGCATATNA
GGATTCAGTGGTCTCATGTCTCTNCTTCTTAGGTAATTCGAGAATCAAAAAAACGGTGGT
TTCCTA
GenBank Accession BX289841 [GenBank]
Graphic View Graphic view of gene At4g38050
Predicted Position of Insertion Chr4:17871798 - go to primer design
BLAST e Value 1e-164
Hit Clone Code (BAC ID) F20D10
Hit Gene Code At4g38050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Xanthine/uracil permease family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g41730

 
Sequence (A. th genome BLAST matches underlined) 
>87-K018170-022-430-G11-8409
GATCATGTNATTTCCCGGACTGAAGCCATTTACAATTGATATACCACCAGCGAGCGGTCC
AAGTACAGTCATTGTCACGTGTCGCCAGCTATCAAGTCGGGCCACAAATCTAAGGGTCGC
CGTAAGCTACAACCTACAAGTTGGTGGAGTGAGGATAAGCTATGGGATCTCCCCTATAGT
GAGACTCTNCTGATTATTCTCCACCCCCTCCTGCTATAATTAAACCCTTTTTCCATATCC
TTATAGATTTTCCCGCCTTCATTCTCAATCTCCGTCCTTTCCTCTTTCCTGTTTAATCTC
CTCTCTTCTTCTTCTCTATGGGATCCTCCCTATAGTGAGANNAGTNNNANNNANTAATTC
CCACTTCTCCTTCACTTTCAACATGTAAATCT
GenBank Accession BX289842 [GenBank]
Graphic View Graphic view of gene At2g41730
Predicted Position of Insertion Chr2:17409653 - go to primer design
BLAST e Value 7e-58
Hit Clone Code (BAC ID) T11A7
Hit Gene Code At2g41730 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-binding site protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37