SimpleSearch - Line and FST details


Line specific information

 
Line ID 461D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N444206)
Segregation Analysis 50:48:45
Confirmed for Hit At4g28710 At5g64990
Parent of DUPLO pair none
Parent of pair(s) 7244, 7268, 8406, 9169, 83582, 83590, 83596, 83600, 83604, 83609, 83612, 83613, 83614, 83615, 83616

Gene hit At4g28710

 
Sequence (A. th genome BLAST matches underlined) 
>76-K018951-022-461-D10-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATACTGGGAAACTAGCC
TGCCTTCCTTAGCATCCCATGTGACTTTGTCGCGTGGCTGTCTATCGTTTGATGACCTTA
CTCGCTGAAACGCTCTTCCTCACATACTTCGATGACCGGCATGAATGACACGTGTATGTT
ATGCTATCTTACACCCAAACGCAAGAGCCAACATTGACTGTAGTACAAGCCTGCAAAACC
AACAATTCAGATACTTCTATTTTCACAGCTTTATTTCAACTTCTAAAACATAGTATGAGT
ATATTCCCTTTCAAACTATGAACACCCATCATCTGCTACAACAAGAAACTAAAAACAGTT
CAAAACTAAAGTTACAATAAGAAGAATCCCTCTCCGAAAGAGGACCATTCTATACCCTAT
GG
GenBank Accession BX291290 [GenBank]
Graphic View Graphic view of gene At4g28710
Predicted Position of Insertion Chr4:14173109 - go to primer design
BLAST e Value 1e-108
Hit Clone Code (BAC ID) F16A16
Hit Gene Code At4g28710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Myosin family protein with Dil domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX291290 [GenBank]

Gene hit At5g64990

 
Sequence (A. th genome BLAST matches underlined) 
>76-K026076-022-461-D10-8409
ATGAAGCCATTTACAATTGAATATATCCTGTAGTCATTGACATCTACTTGACACTGTATA
GTTTAAACCGAAGGCGGCAAACTACAATCTGATCCCCGAGGTATGGGATCCTCCCTATAG
TGAGATCTCCATGANCTNANCTCCCAACTCTCGAGCTTTATTCTCCCCTTCCTCTATCCA
AACTTGCCTATACTTTATTCAATCACATCACACAACATCATATGATTTTTGTGAAATGAA
TAACCTATCTTTTGATTTGATTTTAGTGGACTTCTTTATACCTTTTATTCTCCATATCCG
TTTTGATCCCCATTCAAACTATAATGACTTAGCTGCCTCTTTCTGCTCCATCTTCATCTA
TCCACTTAAAAGTGTTAATGATTGATTGCCTACCTGCACATATATAACTTTTTTCAAAAA
GenBank Accession CR397443 [GenBank]
Graphic View Graphic view of gene At5g64990
Predicted Position of Insertion Chr5:25963733 - go to primer design
BLAST e Value 4e-58
Hit Clone Code (BAC ID) MXK3
Hit Gene Code At5g64990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RAB GTPase homolog H1A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37