SimpleSearch - Line and FST details
Line specific information
| Line ID | 463E06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N444406) |
| Segregation Analysis | 50:28:28 |
| Confirmed for Hit | At5g45840 |
| Parent of DUPLO pair | 2594 |
| Parent of pair(s) | none |
Gene hit At5g45840
| Sequence (A. th genome BLAST matches underlined) | >45-K018953-022-463-E06-8409 GGCACTCTCCTATGGGATCCTCCCTATATACATAACCGATGATTACGCAGCAAAGGTTCT TACTTTCTTGCTTAACAAGAAAACTGTTTTAGTAGTTATTTCTTTCTTGCTTAACAAGAA ACTGGTGTTCTTGATTCTTAATACAAGACCTATGGGATCCTCTCCTATAATGAGACCGGA TCATCTTCTGCGCAATAACGAATCACATCAAGAAAGGGCTTATGGTTGACTCTTGACATT GTATCAATCTGCAAATATAAGCTCTGAAAACATGAATCAAGTTTTGCGGTAAAAAGGGTC TAAGAAAAACTGTTTATTTTAATTACCCTTCTGCGGTAAGTCATTTCCATAGCTCTTGTC CATTCCCTATGGGATCCTCCCCTATAGTGATACTCCCCTATAGTGA |
| GenBank Accession | BX291453 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:18594852 - go to primer design |
| BLAST e Value | 2e-76 |
| Hit Clone Code (BAC ID) | K15I22 |
| Hit Gene Code | At5g45840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX291453 [GenBank] |
Gene hit At5g65180
| Sequence (A. th genome BLAST matches underlined) | >45-K018986-022-463-E06-8409 GATCATGAAATTTCCNGGACATGAAGCCATTTACAATTGAATATATCCGGACATGTATGC GAGATCCACGCTGACCGGCTCCAAATTTATCAGCAATAAACCAGCCAGCCGGAAGGGCCG AGCGCTATAACGTGGGACAGCAACTTTATCCAGCCTGCCATACACAACTATATAATTGTT GCACAGAGGAAGCTGATGGGACCCCACTGATAATCATGANCTATAGTGAGANCGAACAGA AATGTAAAAAAATCGAGTGGGAAAATGAAAATTGAGATCGATAAAAAAAGAAATTGGAAA AATAAAAAAATGAAGTAAGAAAAAGGAGAAATTAATGGCAGACGGCGTTAGGACAAAGAA AAAGAGAACGCCTTTCTATGGGATCCTCCCCTATAGTGAGANTGGNNNNANNGNNANNAN NNNTNNNNANANNGATAAAAAAAAAAAAAAAAAANAAGGNGGGGGGGGGGAAAAAAAAAA GAAAAGGGAAGGTAAAAAGATAGATAGGAAGGTAGAGGGAAGGGGGATAGATGGATAGGT GAAGGAGGGATATGAAAAGGGCAGGAGAAGGGGTGGGGGGCGGAAAAGGGGGGGAGGTTG GGGGGTTGGNAAGAGGGAAAGATAAGAATAAGAAATTA |
| GenBank Accession | BX291454 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:26045378 - go to primer design |
| BLAST e Value | 7e-18 |
| Hit Clone Code (BAC ID) | MQN23 |
| Hit Gene Code | At5g65180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ENTH/VHS family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
