SimpleSearch - Line and FST details


Line specific information

 
Line ID 498C10
Vector Used pAC161
Line Availability available as T3 set from NASC (N447746)
Segregation Analysis 50:23:18
Confirmed for Hit At5g39930
Parent of DUPLO pair 2768
Parent of pair(s) none

Gene hit At5g39930

 
Sequence (A. th genome BLAST matches underlined) 
>75-K019699-022-498-C10-8409
TGATCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCTTGAGAAGCAAG
AAACTAGAAGATAGAACAAGGAGTTTTTTATTATTATTTTTAAGTTGTAAACTCTACTAC
ATATATCTTTTCAACTTCTTTGAAGATGCTCCAGTTTATTCTCCTATATACTCTGTTTGT
TGAATTGAAGATTTAACGAAAAATTTGGTTGTTTTGTTTTCTCTTTATAATAAGTACATG
TACTTGATTTTGTTTTTAAAAAATCCACTGTATGTATAAAATCTATAAGTATCTCCAACA
ATAAGATATGTATTTGTACAAATCTTTAAGATATGTATGTATACACAGTATATATACACA
GTATATATATATAGGATTTATCTCCCAACAATTTTTCTCTCGTCAATATATACTACGTAC
GACTACGAGGTTGAATAGTACGAGCCGATTTTTTTTTTCGTTCTATCGATGCAACGCCTA
CGTAAGTTCTTTGGGAAAGGCATTCATTATTTTCACACACCACTTAATAAAAGGGTAGGG
GGTGAACTAACAAGATGTTGTTTTATATACTTGAAGTCTTTTAAAAAAATGAGAATCACC
TTACAACAAGTTTGAATTTAAAAATTCTAGACAATATTTTTTTTTAGCTTTAATTAAAAA
TATTTGGGCTCCTAGGGGACCCCCC
GenBank Accession BX533154 [GenBank]
Graphic View Graphic view of gene At5g39930
Predicted Position of Insertion Chr5:15985243 - go to primer design
BLAST e Value 7e-126
Hit Clone Code (BAC ID) MYH19
Hit Gene Code At5g39930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CLP1-similar protein 5
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX533153 [GenBank]


Last Updated on 10.06.2021 13:37