SimpleSearch - Line and FST details


Line specific information

 
Line ID 500F07
Vector Used pGABI1
Line Availability available as T3 set from NASC (N447971)
Segregation Analysis 50:28:16
Confirmed for Hit At4g11370
Parent of DUPLO pair none
Parent of pair(s) 12610

Gene hit F16A16

 
Sequence (A. th genome BLAST matches underlined) 
>54-K019129-022-500-F07-8409
TGATCTGTAGATTTCCCGGACATGAAGCCGTTTACATAAGAAAGTTTAGAAAGTGAGGTA
TAGCAGACGCGATTACCCAAAACCCCGAGTTACCAATCGAAACCTTTACGTATATAGTTT
TTTATTCTTGTATTATACGAATATCCACACTACGACCTATGGGATCCTCCCTATAGTGAG
AGTATGGGATCCTCCCTATAGTGGGCGACAGGGAATGGGCAGATCGCGGGGGGACGTGAA
TGTAGACACACCCTGGGGGCCCCCCTCGAGAGAGAGAGAGGGGGTCCCCCCACCCCGGGG
GGGGACGAGAGTGTAGACCCTCTGGGGGGGGCGCGAGAGAGA
GenBank Accession BX533414 [GenBank]
Graphic View Graphic view of sequence BX533414 of line 500F07
Predicted Position of Insertion Chr4:14242889 - go to primer design
BLAST e Value 5e-50
Hit Clone Code (BAC ID) F16A16
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit BX533417 [GenBank] BX533416 [GenBank] BX533414 [GenBank]

Gene hit At4g11370

Sequence (A. th genome BLAST matches underlined) 
>54-K019227-022-500-F07-CR3S
TGATTTGATTTGTAAATACTTCTATCATAAAATTTCTAATTCCTAAAACCAAAATCCAGG
TGTAGCTGCCTAAGCTTATCAGTCGGACTCGATATCTGACAAACAATCCGTACAACAACT
CTTCCGGATCGGTAGGAAGATGCCGAGAACCGAACCTCTCGCGTGCATCAACTCGTTAGC
ATTACTCAACTGACGTAAATAGAGCGTGTCGGGTCAAATCGGGATGCATAGCGTCTCATT
GTAGGTCTGATGGGATCCTCCCATA
GenBank Accession FR811230 [GenBank]
Graphic View Graphic view of gene At4g11370
Predicted Position of Insertion Chr4:6908083 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) F8L21
Hit Gene Code At4g11370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING-H2 finger A1A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details