SimpleSearch - Line and FST details


Line specific information

 
Line ID 501A06
Vector Used pAC161
Line Availability available as T3 set from NASC (N448006)
Segregation Analysis 50:31:24
Confirmed for Hit At1g18720 At5g25550
Parent of DUPLO pair 575
Parent of pair(s) 3106

Gene hit At1g18720

 
Sequence (A. th genome BLAST matches underlined) 
>41-K019701-022-501-A06-8409
CTGCCATAACTACTATTCATGAATGTTCGAGGCTAGATACCGGATATTATTACTGCTGTC
TCACCGCTATCAGCTAATGAACGGACCCATAGACGACACATTGAGAGGACTACTGATATG
AATAACTCTATTTCTTCTTCCCCGAGCATAGCCCATGATATAAACGAACTTTCAAGTCAA
AGCATAGAATACTATGAACAATAAATAGCATGAACCACACTCACATCATATAAATATACA
CATAAAGCAACACCTGGATACACATAGTCATATACCCTCATAAACATGCTTCTACGCATT
ATTTTCTCCAAAAATGAAGTTTTTTCAAAAACCCTAAATTGAAATTAGAGAAAAAAAATC
TAACCTTTAAGGCAAGAGAAGATCCTATGG
GenBank Accession BX533460 [GenBank]
Graphic View Graphic view of gene At1g18720
Predicted Position of Insertion Chr1:6458932 - go to primer design
BLAST e Value 3e-140
Hit Clone Code (BAC ID) F6A14
Hit Gene Code At1g18720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ER membrane protein, putative (DUF962)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g25550

 
Sequence (A. th genome BLAST matches underlined) 
>41-K019686-022-501-A06-8409
CTACTATTCATGAGATGTTCGAGGCTATGGGATCCTCCCTATAGCGAGATTGAGTCTCCT
TTTCGAACTTGATCTTAGTAATAACCGGTTCGCTGGTAAATTCCCGGAAGTGGTAATCGG
TTTACCGAAATTAAAGTATCTTGATCTCCGGTACAACGAGTTTGAAGGTGAATTACCAGA
ATCTTTGTTCGATAAAGATCTTGACGCTTTATTCCTGAATAGTAACCGGTTTAGAAGTAA
AATCCCGGTTAACATGGGAAATTCACCGGTATCGGTTCTAGTTCTATGGGATCCTCCCGT
ATAATGAGTGTATACCGCCGAGTTTCTGCCAAATGGGTGTGACTCTAAACGAGATCATTC
TTATGGATAACGGTTTACAATCTTGTATACCTAATGACGTGGGATTACTTGCAAACGTGA
CGGTTTTGGACATTAGATATCACTGGATGGTCGGAGA
GenBank Accession BX533459 [GenBank]
Graphic View Graphic view of gene At5g25550
Predicted Position of Insertion Chr5:8894565 - go to primer design
BLAST e Value 5e-170
Hit Clone Code (BAC ID) T14C9
Hit Gene Code At5g25550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37