SimpleSearch - Line and FST details


Line specific information

 
Line ID 511D03
Vector Used pAC161
Line Availability available as T3 set from NASC (N448999)
Segregation Analysis 50:20:13
Confirmed for Hit At5g44316
Parent of DUPLO pair 12254
Parent of pair(s) none

Gene hit At1g22020

 
Sequence (A. th genome BLAST matches underlined) 
>20-K021274-022-511-D03-8409
TCCTCTTATTACAATGATGCTATTGCCACCATTGCAACTGTGTCAGATTTTCCATGGTGT
TAGATCTGCTTAACCATGTGTCATGGGTCTATAGCAAAATTTTACCAGCTATTTGAGACA
ATGGCTGAGTTTCTTAGCGTATCTCTTTTTTCTCATCTCTCTATGGGATCCTCCCTATAG
TGAGAGTCAAGTACTTAATCTCCGCTCCTTCTTCGCAATATAGCTCAACAACAGCAGCGT
GAAGCTGATTCATGTCATGAGAAATAACAGAGCCTCCTTCAAACTACTCCATTGTCCCAA
CTTCTTCAACAATTATCCTAGTTCCTTGACACTGATTAATGTTATCTACACCATTCAACA
TCAAACCAACTCCAATGCTGCAATAGATTCTTGTAGAATCCACGCATATATTCAGTTGTA
AATGGCTTCGATCGGNAAACTCATAGATCGCAATGAGTATGATGGTCAATATGGAGAAAA
AGAAAAAATAGTTACCATTTTTTTTCATTCAAATG
GenBank Accession BX649864 [GenBank]
Graphic View Graphic view of gene At1g22020
Predicted Position of Insertion Chr1:7756297 - go to primer design
BLAST e Value 2e-69
Hit Clone Code (BAC ID) F2E2
Hit Gene Code At1g22020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation serine hydroxymethyltransferase 6
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g44316

 
Sequence (A. th genome BLAST matches underlined) 
>20-K019921-022-511-D03-8409
NGATCATGAGATTCCNGGACATGAAGCATTTACAATTGATATATCCTCTTATTGTACAAT
GAGGCTATTGGCAGTCATTGCTACTGTGCCAGATATTTCCATGGTGTTAGATCTGCTTAT
CCATGTGGACTGGGGCTATAACAGAATTTTACCCTCTATTTAAAACAATGGCTGAGTCTC
TTAGCGTATCTCTTTTTTCTCATCTCCCTATGGGATCCTCNCCTATAGTGAGACCTGCAT
GACGTCATCTCCTACTCCTTCCTCGCATTAGAGCTCAACAACAGCAGCGTGAAGCTGATT
CTTGTCATGAGAAATAGCAGTGCATCCTTCTGAATACTCAACAAAACTACCTTCCTCAGC
AACAATCAATAGTTCTTTCAAACTGACCAGTGTTTTCAATAGAATTCATCCGAAAATAAC
TCGAAAGAGGCATCGGACACCTATGGGAT
GenBank Accession BX534679 [GenBank]
Graphic View Graphic view of gene At5g44316
Predicted Position of Insertion Chr5:17854079 - go to primer design
BLAST e Value 3e-88
Hit Clone Code (BAC ID) K9L2
Hit Gene Code At5g44316 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Stabilizer of iron transporter SufD superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX649863 [GenBank] BX534679 [GenBank]


Last Updated on 10.06.2021 13:37