SimpleSearch - Line and FST details


Line specific information

 
Line ID 592C03
Vector Used pAC161
Line Availability available as T3 set from NASC (N456763)
Segregation Analysis 50:43:39
Confirmed for Hit At4g29930 At3g58220
Parent of DUPLO pair 12068
Parent of pair(s) none

Gene hit At4g29930

 
Sequence (A. th genome BLAST matches underlined) 
>19-K021782-022-592-C03-8409
AGCCATTTACATTGAATAATCATCAAAAATTTCCAACCTACAGCTTATAATATAATTACC
TTTTTCAAAAAAATAGAACGTTAGTTCACGAAACTAGCATTTTTGTAATTAGATTGTTTA
CACCAAAGTCCTATGGGATCCTCCCTATAGTGAGACTCACTACTCTTGGCAATTAAGAGG
TCGATCATTTCATTTCAAACCTGGCCTTATCCGTCCTTTTAAAGATTATACAAAAACATT
AAACAATGATTTATCCACCAATCTCATTTTCCACGGGAAATAATTATAGTAGTAATGCGT
GCAGGTGTATATACACAAATTTATCAGTTCTAATTTTCTTTTTACGTGCTGCCAAAAAAA
AAGAAGTTTTTTTTGTCGGATTCGGGTAAAACCTAAACCCCCCTAATTTTAGTAATCTAG
ACGGACGTTGGACTTCCTATGGGATCCTCCCTATA
GenBank Accession BX653842 [GenBank]
Graphic View Graphic view of gene At4g29930
Predicted Position of Insertion Chr4:14646842 - go to primer design
BLAST e Value 5e-98
Hit Clone Code (BAC ID) F27B13
Hit Gene Code At4g29930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g58220

 
Sequence (A. th genome BLAST matches underlined) 
>19-K021769-022-592-C03-8409
GGGGAGAATANGGAGTCCACTTGGTAAGAACGAGTTCAGTTGGGTAATCAAGGATTTCTC
CTCTTTGGGAGTGAGGGCAATTTATTCTGACGAATTTGTGATCGGTGGCTGCAAATGGTA
AGAAACCACTCTGTCTTTTTTTCTGATGTTTTCCGGTGAATTTTAGCTATGGGATCCTCC
CTATAGTGAGACGTATTACTCCTCGGTTTACCCGGATTTGGTAACTCAATGTGATCCTCG
CTATCTTGAGAACAAAAAGAAATGAAAGTAAATTTTGATAAAACGACGAATTACGATCCG
TCGTATTTATAGGCAAAAGCAATAAACAAATTATTCTAATTCAGAAATCTTTATTTCGAC
GGGTCAAANTTCGCGTGCGAGTGGGGGCGTAAATGGGAATATTCAGGATC
GenBank Accession BX653841 [GenBank]
Graphic View Graphic view of gene At3g58220
Predicted Position of Insertion Chr3:21566433 - go to primer design
BLAST e Value 1e-76
Hit Clone Code (BAC ID) F9D24
Hit Gene Code At3g58220 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TRAF-like family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37