SimpleSearch - Line and FST details
Line specific information
| Line ID | 595B03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N457039) |
| Segregation Analysis | 50:47:35 |
| Confirmed for Hit | At1g10390 F22J12 |
| Parent of DUPLO pair | 436 |
| Parent of pair(s) | none |
Gene hit F13M22
| Sequence (A. th genome BLAST matches underlined) | >18-K021862-022-595-B03-8409 NNNCCGTCGCTATTCGGACATGAGCCTTTACAATTGAATATATCCCAGATTGTGCGGTTC TTCAAGGCGCGAGTTTCCCCCTTGAGATTGACCGGTTTCGCTGCCATCCGGTATATCTAT CGCTTCTGAAATGTCTTTAATATAGTACCAGCTAAGATCTATGGGACAATTATTCATCAT TCGATCCCTTTCTTGAAGATTGTGTCAGAACATATTCCATCGTCATGTGATTTTATTTTG GATTGTTGTGACACAACATGCGTCCAATCACTCAAGGAAGTAGATACGTGTCAATACTTT TTTTTTATTTTTAAACCAACAGGTTTCGGACTTAAAAGTTAGTAATACCCCGTATTCTTA TTACGGAAACCATAACAACTTACTTAGTCATTTTTCCGGTAAGATTCGAATTAAGCTGAG ATTTTAAAGCGCATTTAAACGATCGCCTATGGGATCCTCCCTA |
| GenBank Accession | BX654104 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:15826673 - go to primer design |
| BLAST e Value | 3e-96 |
| Hit Clone Code (BAC ID) | F13M22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g10390
| Sequence (A. th genome BLAST matches underlined) | >05-K118300-0022-595-B03C-8409 ATTTCATTGAATATATCCTGGTAATTACTAATTATTTGCCTATATATCCTTATTGAACCA AAAAGATTGGAAGAAGATGTTACACCAAAGGGCGAGGAACCAAAATTTGAGGTAGCCGTT CCAAAACTCGAACTAGCAATTGTTGGGGTTTGAGGGGCAAAAGGGTTGGTAGATGTTGAG CTCGAAAAAGGGTTTGTTGGATTTGCTGATGTCTGACCAAACGCCGGTGATGGAGAAAAT GGATTTGGTTGAGAAGGTGATATACCAAATCCGGCATTGCCAGGAGACTGGCCAGCAGGA AGTGGTCCACCTGAGAATTGAAGAGTACGAGAATCAAGATTTAGTTAAATAAGGCACAGG AATGTAGCCTTAAGCAGATGTAGTACAAGATTTGTTTGATCAGGTGTACCTTTATCTCCT CGCTGGTAATCTTCCCACCTCAGCTCCTCATAGTTTTTCTCTTTGTATGCTGGCATGGCA GAAATAGATTCCAACTTTCCAGCAGGCTGAGTGCCGGTCCCTGTGTCTGCCTCAACAGTT GGTGCATAAGGCACAGCTCGACTGCCCCCTTGTTGACCACCGAAAGTTGATTGACCAAAA CCAGAACCCCCAAATGTAGGGGTTGAAGCCTGCGCACCTGCAAAACAAATCATGCAAACA TATTTCGTCACCCCTTTATTCAAATGAGCAACACACCAATAAAGCAGTT |
| GenBank Accession | HG969054 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3410069 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F14N23 |
| Hit Gene Code | At1g10390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Nucleoporin autopeptidase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX654103 [GenBank] |
Gene hit F22J12
| Sequence (A. th genome BLAST matches underlined) | >04-K118300-0022-595-B03C-35St ACGGTTACACCTCTTAAAAGAAACACAGTGGAGTTCCAAGATGGTAGTGAAGTTGTAGTT AGTCTGGACTACAAAAATTTGAAAAGCCATTGCCACCATTGTCTCCGCTTATCTCATGTA GAAGTTGATTGCCCTGGCCTTAAAAAAGCTGACGAGACAAATAAAAGGACAAATCAAGTT CCCCCTGAGAGAACAGCTCAAAAACCAAAGGAAGGCCACAGATCTAACAATCAAGGCCTC AGGTTATCTCAGGAAAATGGGTCGTCTCACCTTTCAGATTTTTCGAGAAACAAAGAGGCG CTGAACCCCTATAAGAGAAAGACAGAGGACATGTATGGGAGAACAAACCACGAAGCTGAC TCAAGATCCCATGGCTTCAAATCTCCAATCTCTCGACACTCTCCCCCTCGACACACTCCT TCTTTCAGAAGAGAACCTCCCAGAACTTTCAGCAGGAATAATCATCANNNTNNNNGNCCT TTGTGAATTTGTAGATTTTGAACGTACCAATTTGTCACGCACCTGGTCTCCAAAGTAGCG TTATCCCTGTAATCTGCTGAGAATTCATTCACGTCATATCTGAAGAGGACGGATTGTTCG ACTTCACGCCTTCATATGAAGGTGAGATTTTGTTACTGCCAAGAAATCTGGTTTTTACTC CTGATAGATTCCATTAATACGCTTTAGGGCAAGATTTCTAAAACTAAAATNGAGATAACA ACACATTGACCTTTTGGAAGTGTTCATACGTGGGAACCTCCAGACACAATGGATAATTCA ATAAGAGACAAAGTTGCTACAAGGTGACTTTTTTCTATCTCAATAATCTTGAATTGATGC AAATTTGATCAGCATAGTATGTAGGCTTTTCGAGTGTAATTTGTCCACTTAAGATTATTC GAAGATGCTTTTCTTTAAGTATGTTTATATTACGGACTTCGTTTAGAATCGCAAACCAGA TAAAAAATATTAGAATATCAAGCGTGACACAATTATGGCGCTATGGAAATTAATCTAAAA AATGAAAATAATGTTTTCCCACAAATATAATGTTCATTAA |
| GenBank Accession | HG969054 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:15498799 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F22J12 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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