SimpleSearch - Line and FST details
Line specific information
Line ID | 602B10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N457718) |
Segregation Analysis | 42:40:34 |
Confirmed for Hit | F11C1 At5g60980 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit F11C1
Sequence (A. th genome BLAST matches underlined) | >26-K023858-022-602-B04-8409 TTTTTTAGTGTTATTCCGCACATGAACCATTTACATTGAATATATCCTGTCCTTACCTGA TGTGAGATGCCCACCATGTCCGGCTTTACCTTCTCAAAGCACGGTCTCAAGATTACACAT GTAGTGTTGTAAGGTTCCTAGGAATTCGCTCTCCAACCGAAATACATCTTTACTAACGTG AACCTCTGCTAAACTCCTATCCATACCTAAATCCAACCTTTCACATCGAATATAGTATAT AGTTCATGTATCCACGAAAATTTGGTCAATTCTAATAAATACAATGAGTACCTACAGATC TGATCCAGCTTCTTTTCTGCTCCATTTTTTTAAGCGATTACCAGATCTTAAGTTTAAATC CATATTCCCAAAAACCACTGTTCGCTGAAAGATTCCAACAAAAAACTTCCATGCGAACAC TATCAATAGAGACGACTGACCTCAATAATCAATGTAAACAAAAATAGAAACTAATATAGC TAGATCCGATATAGCACCCATCATATTTACTCAAAAATACA |
GenBank Accession | BX892405 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:18669152 - go to primer design |
BLAST e Value | 3e-62 |
Hit Clone Code (BAC ID) | F11C1 |
Insertion Classification | Genome Hit |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g60980
Sequence (A. th genome BLAST matches underlined) | >26-K023857-022-602-B04-8409 ACATGAACCATTTACAATTGAATATATCATTCACTTACATGCTGTGACCGGTCTCCCTTT GTACGGCTTTGGCGTTCCCAATGTACGGGCTTCCGGTTCCCTCTGAAGGGCTTTAGGTTC CCAATGAAATTGCTATCCACAGGAAACACACCTTTTCAACCTTTTTCCCCTGCTATGGTA TCCTCCCTATAGTGAGTCGATCTGTTTCTTTTACTCTTTCTCGATTTGCTTCCAATCTTG ATCTCTTTTCTCTTTCTATATCGAGCTTGATCTGACTCATTCTTTATTATATACTTCTCT TCTCGATTCCTTTTTTGTGAAAAAAACATCTTTAAAATTTCATTTTTGTTATATGCTTCA TGTCTTGATTAAAGTTGATCTTGCAACAGGGATTTTTTTTTTAAATACAAATCAGAAACA A |
GenBank Accession | BX892404 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:24543354 - go to primer design |
BLAST e Value | 8e-75 |
Hit Clone Code (BAC ID) | MSL3 |
Hit Gene Code | At5g60980 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |