SimpleSearch - Line and FST details


Line specific information

 
Line ID 605B02
Vector Used pAC161
Line Availability available as T3 set from NASC (N457998)
Segregation Analysis 50:19:14
Confirmed for Hit At5g44260
Parent of DUPLO pair 11862
Parent of pair(s) none

Gene hit At5g44260

 
Sequence (A. th genome BLAST matches underlined) 
>10-K021275-022-605-B02-8409
ATTGATTTCAGCGAAGTTACCATGCATGGGCAGCTTCAGCCAGCATCGTCGAGCTTCTTT
GGCGATGAATTCACACCACGTGGTGGCCGGATAAACGATTTCTCGGTGGCTGCACCTGCA
GAAGCCCAAGCTATGGGATCCTCCCTATGTTGAAAAGAAATTAGGGAAAAACAAAACAAA
TAAAATCTGGGTGTAGGGGAGAGAGAGCTCGTGCTCGTGATTTTGATATCTATCTCTTCG
TTATCGATTTTGAACATCCACATTGTTCTTAGATCTGAAAAAAAAAAACACGGGTTCTGT
TATTACAATTTGCTCGGCAATTTTGACACCAGGCTTTCAATTCTTTTCGTTGGAGGTGAT
TCAATTTCAGATCCATCGAATCTAATCTCGGCGAGTCGATTCGTGGTCGACATTTTTCAA
AAACTGCTCGCGTGGATCTAAAGAAGAGACATTGTTGTCTTTTGTATATCGGCACTGAAT
TTTTCTGGAAATCTGTGTAAAGATGGATCCAA
GenBank Accession BX654263 [GenBank]
Graphic View Graphic view of gene At5g44260
Predicted Position of Insertion Chr5:17830168 - go to primer design
BLAST e Value 1e-33
Hit Clone Code (BAC ID) MLN1
Hit Gene Code At5g44260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger C-x8-C-x5-C-x3-H type family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g35190

 
Sequence (A. th genome BLAST matches underlined) 
>10-K021275-022-605-B02-8409
ATTGATTTCAGCGAAGTTACCATGCATGGGCAGCTTCAGCCAGCATCGTCGAGCTTCTTT
GGCGATGAATTCACACCACGTGGTGGCCGGATAAACGATTTCTCGGTGGCTGCACCTGCA
GAAGCCCAAGCTATGGGATCCTCCCTATGTTGAAAAGAAATTAGGGAAAAACAAAACAAA
TAAAATCTGGGTGTAGGGGAGAGAGAGCTCGTGCTCGTGATTTTGATATCTATCTCTTCG
TTATCGATTTTGAACATCCACATTGTTCTTAGATCTGAAAAAAAAAAACACGGGTTCTGT
TATTACAATTTGCTCGGCAATTTTGACACCAGGCTTTCAATTCTTTTCGTTGGAGGTGAT
TCAATTTCAGATCCATCGAATCTAATCTCGGCGAGTCGATTCGTGGTCGACATTTTTCAA
AAACTGCTCGCGTGGATCTAAAGAAGAGACATTGTTGTCTTTTGTATATCGGCACTGAAT
TTTTCTGGAAATCTGTGTAAAGATGGATCCAA
GenBank Accession BX654263 [GenBank]
Graphic View Graphic view of gene At2g35190
Predicted Position of Insertion Chr2:14830597 - go to primer design
BLAST e Value 4e-169
Hit Clone Code (BAC ID) T4C15
Hit Gene Code At2g35190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Putative plant snare 11
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit BX654263 [GenBank]


Last Updated on 10.06.2021 13:37