SimpleSearch - Line and FST details


Line specific information

 
Line ID 626H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N460092)
Segregation Analysis 50:48:46
Confirmed for Hit At1g17230 At2g19990
Parent of DUPLO pair none
Parent of pair(s) 3094, 3273, 7749, 11025, 11041, 11043, 11413, 95944

Gene hit At1g17230

 
Sequence (A. th genome BLAST matches underlined) 
>64-K022321-022-626-H08-8409
TCCGCGAAGNAGCCATTTACAATTGACTATATCACTGTCATCTGATCATACTTCTCACCG
CATGGTCACCCTCGGTGTAACCTGTGCTCCCGCCAAACGGATCTGCAGTTAGCTGTCAAA
TTCAACTGTTCTGCTACAGATGTTACTATCGTAAGCAAACCTTTCCTTCTCCGTAAACCA
AAATTCAATTGCTTGGGTATCGCTCAGCGTTGCCCAAGACGCGGTTATGGAATACGCTCC
ATAGGGAGGGTGTTATCTCCTTCGGAACTGTGAAGCTCGAGGCATCTTCGACGACGGTAA
TTCCATAATATTCTTGATGGTGATTGGATCAGGGACCTTGTTTTACATTTAGCCCCGCGC
TAAGTTGACTGATCTCTCGGACACTGAATCCATGTCAGCTGTTGCTGGATCATACTGAGA
CGACGATCCAGGTGAGTAAAACGTCCCAGTTTTATTTCATCCCTCAAACACTTATATAAC
ATATCGAATTGATGTTTTGCTGTGTACACGAAAATGCTAACACGATGAAGGTGACAGAAA
AATGTGATATCAATAGC
GenBank Accession BX657870 [GenBank]
Graphic View Graphic view of gene At1g17230
Predicted Position of Insertion Chr1:5893902 - go to primer design
BLAST e Value 8e-35
Hit Clone Code (BAC ID) F20D23
Hit Gene Code At1g17230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich receptor-like protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g19990

 
Sequence (A. th genome BLAST matches underlined) 
>64-K022016-022-626-H08-8409
GATCCTCCGGGGAAATTAATCAGTCAACGTCCATATTAGTGATTGGATTTTATTATACTG
AATCAACAAGATTACTATATATGGTAATTAATGTGATTTAAGAAAAATTCATACTATAAC
ATTTTGTGTCCTTAAATGATAAAAGCATATATAAATGCACACTAGTTTTTTTACCATCAA
TGTGAGATATGTTTCCATGATATATCAAAGTTGTTGATTTGATTATAATCGACTTCAGAA
TTCTTACAAATTTTTTCTTTCATTTCGCTCTACAGCAAAAGAAAACATGGACAGTTTAAG
ATTGAATAACAGAAAAACCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX657868 [GenBank]
Graphic View Graphic view of gene At2g19990
Predicted Position of Insertion Chr2:8630103 - go to primer design
BLAST e Value 4e-160
Hit Clone Code (BAC ID) T2G17
Hit Gene Code At2g19990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pathogenesis-related protein-1-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37