SimpleSearch - Line and FST details


Line specific information

 
Line ID 687G06
Vector Used pAC161
Line Availability available as T3 set from NASC (N465934)
Segregation Analysis 50:48:44
Confirmed for Hit At1g04230
Parent of DUPLO pair 39
Parent of pair(s) none

Gene hit At1g04230

 
Sequence (A. th genome BLAST matches underlined) 
>47-K022967-022-687-G06-8409
AAGCATTTACAATTGAAAGGTATCATTATGATATATCCTGATTTTTTATGTGAAGTGTTT
CGATGAATACTGATGCAAACCTTGACCGTGGTGGTGGCATTACAACCCTATGGGATCCGC
CCTATGATGAGTCTGATTACTCGATGTGAGAATCTGACCGGGTGACTCGATCTTTTAGAC
CGAATGTCCAAATTTTG
GenBank Accession BX662300 [GenBank]
Graphic View Graphic view of gene At1g04230
Predicted Position of Insertion Chr1:1127520 - go to primer design
BLAST e Value 2e-11
Hit Clone Code (BAC ID) F19P19
Hit Gene Code At1g04230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation rRNA-processing EFG1-like protein (DUF2361)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T14D3

 
Sequence (A. th genome BLAST matches underlined) 
>47-K023077-022-687-G06-8409
ACTGAAGCATTTTCATCTTGATACGGAGATCTCTCTGATATATCATGATTTTTGTGTGTG
AGGTGAAAATGATGTACACTGAATGAAGACCATGCCCGCTTACGATATAGCCCAAATACA
AATTTTAGTGAAAATTGAAATATATGATTGAGAGATTTGAGAATTTCTCCGGCTGAATTG
ATCTTTTA
GenBank Accession BX662301 [GenBank]
Graphic View Graphic view of sequence BX662301 of line 687G06
Predicted Position of Insertion Chr3:16551642 - go to primer design
BLAST e Value 6e-39
Hit Clone Code (BAC ID) T14D3
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37