SimpleSearch - Line and FST details


Line specific information

 
Line ID 820G11
Vector Used pAC106
Line Availability available as T3 set from NASC (N478707)
Segregation Analysis 50:22:22
Confirmed for Hit At1g72610 At5g65430
Parent of DUPLO pair none
Parent of pair(s) 4316, 4327, 4337, 6770, 72375, 72383, 72390, 72397, 72404, 72405, 72406, 72407, 72408

Gene hit At1g72610

 
Sequence (A. th genome BLAST matches underlined) 
>87-K025609-022-820-G11-8409
GAGCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTCTTCCCACTGAACTCG
TCGTGGGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR399725 [GenBank]
Graphic View Graphic view of gene At1g72610
Predicted Position of Insertion Chr1:27339464 - go to primer design
BLAST e Value 2e-29
Hit Clone Code (BAC ID) F28P22
Hit Gene Code At1g72610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation germin-like protein 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g65430

 
Sequence (A. th genome BLAST matches underlined) 
>87-K025640-022-820-G11-8409
CATTTACATTGAAGCCATCATACTCATTGTCGTTTCCCACGTATGGGATCCTCCCTATAG
TGAGAGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTCTTCCCACTGAACTC
GTCGTGAGTATGGGATCCTCCCTATAGTGACGATTTGTATGTGCCTGCCAACCGCATAAT
GGATATTTATTACAAGTGAATACAGGTCATAATAGATCTGTAAAAGGAAATTCTCTTCAC
TCGCGCGTGATTAACACACTCTGATAAACGACGTCGTTAGTTGAAATAAGGATTAACAGC
GTGAAACCCACGTTGAGCGTATGGAATCCTCCCTATATTGAGAAATAGTGGAGCTTGGGC
TTATAAAGAAATGGAAATTTCCGAGCGCTCGAACCCTTTAACATTCATTGACGGTTATGC
CGGGAACGAAATCATCACTCTAGAAAGATGTCATCTTGCGTATAGTGAGGTGCGATAAGG
ATTTAGAGTAGATGATTTTTGATATAAAATATTAAA
GenBank Accession CR399726 [GenBank]
Graphic View Graphic view of gene At5g65430
Predicted Position of Insertion Chr5:26150197 - go to primer design
BLAST e Value 9e-50
Hit Clone Code (BAC ID) MNA5
Hit Gene Code At5g65430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation general regulatory factor 8
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37