SimpleSearch - Line and FST details


Line specific information

 
Line ID 857A03
Vector Used pAC161
Line Availability available as T3 set from NASC (N482179)
Segregation Analysis 50:10:7
Confirmed for Hit At5g04047
Parent of DUPLO pair none
Parent of pair(s) 12121

Gene hit At5g04047

 
Sequence (A. th genome BLAST matches underlined) 
>17-K025966-022-857-A03-8409
TTTTTACATATGTGAAATACGTACTATCTGATCCCCGACCAAGCTATGTGCCTCATGCGA
AGTTTAACGCATTTATTGGGAAAGAAAGTTTTATACATGATATATGTGGAGGGAGAAAAC
CTAACATATGTTTCTGGCAAGCGCAAGAAGATGGAATTTATGTATGGGATCCTCCCTATA
GTGANGAGNNNNNNANTCNNNNNGATGNNTTTTTAAGTTATTGGAAACCTTAAAATCTAA
GGA
GenBank Accession CR402656 [GenBank]
Graphic View Graphic view of gene At5g04047
Predicted Position of Insertion Chr5:1095384 - go to primer design
BLAST e Value 7e-60
Hit Clone Code (BAC ID) F8F6
Hit Gene Code At5g04047 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant self-incompatibility protein S1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g23970

 
Sequence (A. th genome BLAST matches underlined) 
>17-K025967-022-857-A03-8409
GTCTCAAGTTTTACATATGAGAGATACGTATATTTTTTCACGGACCAAACTATGTGCATC
ATGCGAAGTTTAACGCATTTAGTGGAAACGAAAGTTTTTACCTGACATATGTGGAGGAAA
AAACCGTAACATATGGATCAGGAATACGCAAAAACATGAATTTTAGACACGGGATCCGCC
CTATCTGGAGCTGCACCAGATTCGGGATGATGGTATTCCACGATTTGGGAACCTCCGAAT
CTGACGGACTTAAGAAGAGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR402657 [GenBank]
Graphic View Graphic view of gene At4g23970
Predicted Position of Insertion Chr4:12445782 - go to primer design
BLAST e Value 2e-32
Hit Clone Code (BAC ID) T32A16
Hit Gene Code At4g23970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification 5' region
Confirmation Status unknown


Last Updated on 10.06.2021 13:37