SimpleSearch - Line and FST details


Line specific information

 
Line ID 860G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N482543)
Segregation Analysis 50:14:11
Confirmed for Hit At3g57040 At5g62720
Parent of DUPLO pair 9012, 12212
Parent of pair(s) none

Gene hit At3g57040

 
Sequence (A. th genome BLAST matches underlined) 
>55-K025973-022-860-G07-8409
ATGAAGCCATTTACAATTGAGTATATCCCGTCAGAGACGGGCATGGCAGGGATACGATAG
ATCTGTAATTATAAGATTCACTTCAACTACCATGTTGAAAGCAACCGATCAAACACAACA
ACTTCAATAACAACAACAACAACAACAACAAAAACAGAAGAAAAAGTGATTTACAAAAAT
AAAAGAGCAAACCTGGTGATTAACAGGAGCCTTAGAAAACGCATTTGGGTCGTTACTATC
AGTATGGGATCCTCCCTATAGTGAGACCNNCCTATTTCNCCCATCTTCTCATGTTCAAAT
GGAAAAGACATGCCATCACATCAAGTTAAAATAGAAACTTGAAGTATGGGATCCTCCCTA
TAGTGAG
GenBank Accession CR403127 [GenBank]
Graphic View Graphic view of gene At3g57040
Predicted Position of Insertion Chr3:21110516 - go to primer design
BLAST e Value 4e-21
Hit Clone Code (BAC ID) F24I3
Hit Gene Code At3g57040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation response regulator 9
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR403127 [GenBank]

Gene hit At5g62720

 
Sequence (A. th genome BLAST matches underlined) 
>55-K025973-022-860-G07-8409
ATGAAGCCATTTACAATTGAGTATATCCCGTCAGAGACGGGCATGGCAGGGATACGATAG
ATCTGTAATTATAAGATTCACTTCAACTACCATGTTGAAAGCAACCGATCAAACACAACA
ACTTCAATAACAACAACAACAACAACAACAAAAACAGAAGAAAAAGTGATTTACAAAAAT
AAAAGAGCAAACCTGGTGATTAACAGGAGCCTTAGAAAACGCATTTGGGTCGTTACTATC
AGTATGGGATCCTCCCTATAGTGAGACCNNCCTATTTCNCCCATCTTCTCATGTTCAAAT
GGAAAAGACATGCCATCACATCAAGTTAAAATAGAAACTTGAAGTATGGGATCCTCCCTA
TAGTGAG
GenBank Accession CR403127 [GenBank]
Graphic View Graphic view of gene At5g62720
Predicted Position of Insertion Chr5:25193537 - go to primer design
BLAST e Value 3e-19
Hit Clone Code (BAC ID) MRG21
Hit Gene Code At5g62720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Integral membrane HPP family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37