SimpleSearch - Line and FST details


Line specific information

 
Line ID 888G12
Vector Used pAC161
Line Availability available as T3 set from NASC (N485236)
Segregation Analysis 50:44:43
Confirmed for Hit At3g02750 At2g31070
Parent of DUPLO pair none
Parent of pair(s) 987, 3974, 8324, 8357

Gene hit At3g02750

 
Sequence (A. th genome BLAST matches underlined) 
>95-K113050-0022-888-G12-8409
GCTTCTTCATCTCCAACTTGAAGATGGAGAATAAAAGAACTAAAGCCACGACTGAGGATG
ATGATGCCTCAGGACCAAGCGGCCTAACCTGCCCGGCCGCTATATCAAAATGTACTTTCA
TTTTAGTATAACGCTGCGGACATCTGCCTTTTTGATATGAAAAAAAATTGGTAATTACTC
TTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCAGCAACACAAACGCCATA
TCTACAGCTTCTTCCATCTCCAAACTTGAAGATGGAGAAGAAGAAGAACTAAAAGCCACG
ACTGAGGATGATGATGCATCAGGACCAAGCGGCCTAACCTGCCCGGCCG
GenBank Accession FR817249 [GenBank]
Graphic View Graphic view of gene At3g02750
Predicted Position of Insertion Chr3:594079 - go to primer design
BLAST e Value 4e-57
Hit Clone Code (BAC ID) F13E7
Hit Gene Code At3g02750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein phosphatase 2C family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR817248 [GenBank]

Gene hit At2g31070

 
Sequence (A. th genome BLAST matches underlined) 
>95-K112302-0022-888-G12-8409
AGCTTCTTCCTCTCCAACTTGAAGATGGAGAATATGATCAACTATAAGTCCCCGACTGAT
GATGATGATGCCTCCCGACCAGGCTGTCTTTCCTGCCCAGCCGCTATGAACAAGAAGGAG
GAAATTAATGTGATGAATGTAGCTAACCTGCCCGGCCGC
GenBank Accession FR817247 [GenBank]
Graphic View Graphic view of gene At2g31070
Predicted Position of Insertion Chr2:13220896 - go to primer design
BLAST e Value 6e-11
Hit Clone Code (BAC ID) T16B12
Hit Gene Code At2g31070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TCP domain protein 10
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37