SimpleSearch - Line and FST details
Line specific information
| Line ID | 903C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N486623) |
| Segregation Analysis | 50:48:28 |
| Confirmed for Hit | At3g47000 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1936, 4790, 4893, 10091, 10100, 10103, 10114, 10145, 10150, 94507, 94511, 94512 |
| Note |
Gene hit At3g47000
| Sequence (A. th genome BLAST matches underlined) | >51-K114332-0022-903-C07-8409 AGATGACTTCTCTTGTCTCCGGCACGTAAGGTGTGCTTACATAACACCACCCGACTGGTT CTCTTTTTGTTTCAGGAAGGTATCGTATGAATCCTTTCACTGTATACTTATTTGGGACAT TAATAGGTTTGATGTCATTTCTCATGGATTTGTTTATTGGGGTTATAGAAACAACGTCGT CGCGTGTGTCAAACACTTTGTTGGAGATGGTGGTACTGACAAGGGCATAAATGAAGGGAA CTCCATCGCTTCATATGAAGAATTAGAGAAGATACATATTCCTCCTTATCTGAAGTGTCT TGCTCAGGGAGTTTCCACGGTTATGGCGTCTTACTCCAGTTGGAATGGAACTAGCCTGCC CGGCCG |
| GenBank Accession | HE665628 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17315616 - go to primer design |
| BLAST e Value | 6e-149 |
| Hit Clone Code (BAC ID) | F13I12 |
| Hit Gene Code | At3g47000 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Glycosyl hydrolase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g53680
| Sequence (A. th genome BLAST matches underlined) | >51-K030002-022-004-C07-8409 GAAGCCATTTACAATTGAATATATCCTGCGCGACACGAAAAGGTTGAGAACCGGTTTAAG GAAGCCTGCGGATAAAGGAAGCCCCCATATTAGATGATCTAATTTCCAATCTCGAAGATC ATTTTCCCTGAGACAACCGACGTGGTATGGGATCCTCCCTATAGTGAGAGGAATGATCCA CATGCGACTTTTAAACATCATCCGTCCGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGA GATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAAGTAT GGGATCCTCCCTATAGTGAGNCNNANNANNCGANNNNNNNTTNNAGAAGTCTTAAGGAAT GGTGCGAGAGACTGATGAGTGAGGGAGGAGAAGAGTGCGAAGCAAGAAGGNCGGACGGGA GGAGGAATGTAGAGAGGGGGGGGGGGGGGAGATAAGTCTGGAAGATAGTGTACGGGTTTG ACCGAGAGGTGAAATATGCAAAAGAAGGAGAAGCGGAGGTATGTGCGGGCGACAATTAAG GAGTGCGTAAGGAGGTGA |
| GenBank Accession | CR933909 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19894135 - go to primer design |
| BLAST e Value | 3e-07 |
| Hit Clone Code (BAC ID) | F4P12 |
| Hit Gene Code | At3g53680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 180C10 |
| Other FSTs Supporting this Hit | CR933909 [GenBank] |
Gene hit At3g49080
| Sequence (A. th genome BLAST matches underlined) | >51-K114331-0022-903-C07-8409 GGATTCTTGGACATGGGCGTGGGTTTTATGATCCCTATTTTGTCTAACCTGCCCGGCCGC TAATTATCAGGCTGCTACGGGAGAGACTTTTTTAAAAAATTTTGCTGATTCTTAAGTTTT GATCTTATATGCTATGCACCAGTAGTTTCGATATGTGTCTAACCTGCCCGGCCGC |
| GenBank Accession | HE665627 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18196127 - go to primer design |
| BLAST e Value | 8e-25 |
| Hit Clone Code (BAC ID) | T2J13 |
| Hit Gene Code | At3g49080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S5 domain 2-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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