SimpleSearch - Line and FST details
Line specific information
| Line ID | 905D10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N486830) |
| Segregation Analysis | 100:100:86 |
| Confirmed for Hit | At3g10060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 217 |
Gene hit At3g62330
| Sequence (A. th genome BLAST matches underlined) | >76-K114033-0022-905-D10-8409 AATGAACAAACAATTTGACTACTTACAAAACGTACACTGTTTTTAAATTAACGCTAGATG ACTTATTCACTTAAGAATTAAGTTCAAATTGAGTAATTTCTCTTTTGTTTTCTCCGAACT GACAAATTTCATTTCACACGCACAGGTACCGAACCCTAATAGCTAATTTGTCTCGTTCAG CAATCTTCTTCTTCTCGTTTCCCAGAATTTGGGTCGCCATTGATTCGCACCTCGCAAGGT AGGATAAACCCTAATTTTAAATTTCGTTTATCTCTATGAAAGATGGCAACTTTTTTGATT TAATCGTATTGACTAATGAAGAATTTTCTCATAATTATGTTATTTGTCTTTTGTGGAAAA ATCTGGTGTCTTTCTTCTAAATTCACAATTTTTCTAATTCTTAGTGATAGAGTCTTCTAC GGATGAATGAACTCTGGATTGAATCATTGTCTTTGTGGAAAATTGAAATTGAAAGTTTGT GTTTTTTTTTTTACCAAATGAAAACCCTTACCCGGCCCGGCCCAAAANNGNNGNNNGGNN NNTTTTTTGATTGNATCGNNTTGACTAGGGNGGTATTTCCCCTNAGTTATTTATATTGTC TTTAAAGAAAAAATCTGGTTCCTTTCTTCAAAATACCCATTTTTTCCAATTTTAAAAAGA AAAATCCTCCATCAAAAAATAAAACACCGAATAGAATCCTTTTCCTTGGGGAAAATTGAA ATTTAAATTTTTTTTTTTTTTTTTTTAAAAAAGAAAACACCACCCCCCCCCCCGCCAAAA AAANNNNNNNNTTNNNNNNCNNNNNCGGGNNNNCNNNNNNNTNCCCTTTTNTCTGTCTTT TTCTTCNNTTTTTCCCNTCCCTNNTCCTTTTTTTTTTCCTAATCATTCTCCAATTTGATT CAACATTCTACTTTTTTACATAAAGATTAATTATGTTTTCATCAATCAAATNCTANTGAT TTACCACCTTTTTTTNCTCATATCTACTACCTCTTTACTTCACTCTTCATATTTTGATTA CTCTAAATANCTCTTCTATATANTATTCACGTATTCTCCCCTACCTAAAATNTACAATTT TACANTATCATTNTCATTATTTTATTACCTATCTCAATTTCAATATATTTCTTCNGACNC AATTNCTCNTTATTNATCACACTTATTTACACAAATA |
| GenBank Accession | HE665745 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:23066030 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T12C14 |
| Hit Gene Code | At3g62330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Zinc knuckle (CCHC-type) family protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At3g10060
| Sequence (A. th genome BLAST matches underlined) | >76-K030282-022-905-D10-8409 ATTGACCTCTCATCTGATTGACCAACGTCAAACCCATAAGGCTGCAAAAATTCATTATTA TCAGTAAAGGATCCTTGCATATTCAAGTATGGGATCCTCCCTATAGTGAGTCGTATTACT CA |
| GenBank Accession | CR936102 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:3103398 - go to primer design |
| BLAST e Value | 2e-36 |
| Hit Clone Code (BAC ID) | T22K18 |
| Hit Gene Code | At3g10060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR936102 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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