GABI DUPLOdb - pair details


Details for pair 217
  
  Pair Info Parent 1 Parent 2
Pair ID 217    
Parent loci   At3g10060 [Araport] [TAIR] At1g20810 [Araport] [TAIR]
Gene Annotations   FKBP-like peptidyl-prolyl cis-trans isomerase family protein FKBP-like peptidyl-prolyl cis-trans isomerase family protein;
Pair-related paper(s)  
Similarity (TAIRv10) 44.7 %    
Gap (TAIRv10) 23.7 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   905D10 / At3g10060 SALK_007247c / At1g20810
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At3g10060 Graphic view of gene At1g20810
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 217/1a2.04.02
NASC set ID N2102774
Assigned allele   905D10 SALK_007247c
Allele genotype in parent1   Failed  
Allele genotype in parent2     Failed
Allele genotype in DM1   Hom Het
Comment(s) and/or quirks No homozygous double mutant could be obtained (evidence for gametophytic or embryo lethal of the DM).
Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11