SimpleSearch - Line and FST details


Line specific information

 
Line ID 966C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N492665)
Segregation Analysis 50:44:42
Confirmed for Hit At2g16770
Parent of DUPLO pair 12243
Parent of pair(s) none

Gene hit At5g08070

 
Sequence (A. th genome BLAST matches underlined) 
>03-K113986-0022-966-C01-8409
GATTACATACTAGACGCCGAATCTGATGCGAGCAAAGGTACATATTCGTAATTCACGATT
GTGACTGAGTTGGTAAAATATCTAATTCTTTGTACCGCTCCTTTCAATATAAATAACATC
TCCGCGAACTCACTTTTCACGATTGGATGTAAAGTTGGTAGTGCCTCTTTCTGCTACACC
ACAGGGCCCATTGCACGCCTAGCCCAAACCTGCCCAGCCGCTAGACATGAAGCCATCTAC
AGTCTTATTAAAGATTATATAATAGACGCCAAATCTGATGCGAGCAAAGGTACATATTCA
TAATTCATGTTGTGATTGAGTTGGTAGAATATCTAATTCATTGTACCGCTACAATCAATA
TAAATAATATCTCTCATACAAACTTTTCACATTTGTATGTAAAGTTTGTAGTGCCTAAAT
ATGCTATAACACAGGCCTCATTGCACGCCAAACCCTAACCTGCCCGGCCG
GenBank Accession HE667357 [GenBank]
Graphic View Graphic view of gene At5g08070
Predicted Position of Insertion Chr5:2585540 - go to primer design
BLAST e Value 2e-120
Hit Clone Code (BAC ID) T22D6
Hit Gene Code At5g08070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TCP domain protein 17
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g16770

 
Sequence (A. th genome BLAST matches underlined) 
>03-K101963-0022-966-C01-8409
AGCATTTACATTGAATATAAATTGGTAACTACAATTGTTTCTCTTATTAACGCCGGATCC
ATTGACAGTGAATGTTCCAATTCCATTACTACAAACAGGGATCTCCTTGCCAGCTAAATT
CTGATTAGCCAAGCATTCTATGGGATCCTCCCTATAGTGAGACGTATTGGTCATGCCCAT
ACGGGG
GenBank Accession CU458528 [GenBank]
Graphic View Graphic view of gene At2g16770
Predicted Position of Insertion Chr2:7280590 - go to primer design
BLAST e Value 4e-51
Hit Clone Code (BAC ID) T24I21
Hit Gene Code At2g16770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Basic-leucine zipper (bZIP) transcription factor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR819314 [GenBank] CU458529 [GenBank]


Last Updated on 10.06.2021 13:37