GABI DUPLOdb - pair details


Details for pair 352
  
  Pair Info Parent 1 Parent 2
Pair ID 352    
Parent loci   At3g19670 [Araport] [TAIR] At1g44910 [Araport] [TAIR]
Gene Annotations   pre-mRNA-processing protein 40B pre-mRNA-processing protein 40A;
Pair-related paper(s)  
Similarity (TAIRv10) 58.4 %    
Gap (TAIRv10) 12.1 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   156D11 / At3g19670 791F02 / At1g44910
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At3g19670 Graphic view of gene At1g44910
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 352/1b3.22.1
NASC set ID N2102781
Assigned allele   156D11 791F02
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11