DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_044115c
Line Availability available from NASC (N669623) and ABRC (SALK_044115c)
Confirmed for Hit At1g71100
Parent of DUPLO pair none
Parent of pair(s) 2599, 92032

Gene hit At1g71100

 
Sequence (A. th genome BLAST matches underlined) 
TCACAGCCGGCGCCGCCTCTTCGCCGTTAGATCCGATTTTCATCCTCAGCTTCGCAACAC
ATCCCGAATCTCTAAATAGCTCTTCCAGTTTCCCCCTTGTGAAATCGCAGCAGAACGGAA
CAACCTCCACCGGAACAG
GenBank Accession CC053493 [GenBank]
Graphic View Graphic view of gene At1g71100
Predicted Position of Insertion Chr1:26815347 - go to primer design
BLAST e Value 5e-73
Hit Clone Code (BAC ID) F23N20
Hit Gene Code At1g71100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribose 5-phosphate isomerase, type A protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g48030

 
Sequence (A. th genome BLAST matches underlined) 
ATCAGCTTTCGCAGTCTCACTGCTAGAAAGAGACTTACTGGCTCGCCGCCATATTGCCTC
TAAAGAGCGGACAGACCCGGAGCGTCCACCAGAGTGGCCTCAAATTGATTCGTAATACCG
ACTCGTAACAATAATCCCAATCCGGGCCGTCAACCTCCCGTTCCCCACTCCGAGTAATAA
CTATGCTCGCCTTCCACACGTTCCTGTAAATCATTCACATATAGTATAATTAACCTAATT
AACACAACCCGGGCCGGCGACCACCCGTGCGCCTTTTGTGACCCCCCAAGGGGGGGGGGG
AGGCGTGCGTACCCACACTTCAAAACCCAAACGAAGACGTTCGGAAGACCCCACACAAAC
CCTCAGTCACAAGACCACACAACCCGAACAACATCCGNACAACAAAATAGNATCTCCCGA
GCCGGTCCCAATATATCGCCGTGAGCCTCGGCCACTCGAGCTCCTACAAATGAACCAAAG
CG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At2g48030
Predicted Position of Insertion Chr2:19648634 - go to primer design
BLAST e Value 2e-22
Hit Clone Code (BAC ID) T9J23
Hit Gene Code At2g48030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DNAse I-like superfamily protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on Thursday, 10 June 2021 13:37